Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq139863 273 3e-68 seq194330 86.0 9e-12 >seq139863 Length=2592 Score = 273 bits (302), Expect = 3e-68 Identities = 494/719 (69%), Gaps = 17/719 (2%) Strand=Plus/Plus Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 ||||||| || || |||||||| | |||||| ||||| |||| |||||||||||| | | Sbjct 1311 AATAATCGGTCAGCAACAAATTCAATATATTGCGACATTAAATTGCAATTCATACCAATT 1370 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | | | ||||| || ||| | | |||||||| || || | || | || ||| Sbjct 1371 AAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGTTCAATTTTCACTGCTTCAGATATA 1430 Query 18101 ATGTTTATTACCCTAGATTT---TGGCAATTTATTAATTATGTGATTATAATATAATAAA 18157 || | || | || ||| ||| ||| | |||| || ||| || || |||| Sbjct 1431 ATTTCAATAATTCTTTCTTTACTTGG---TTTTTGTATTAAATGTTTA-AACAT--TAAA 1484 Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||||||| ||||| ||||||||||| || |||| ||| || ||| ||||| Sbjct 1485 CATGCAAAATCACAATGTAATCCTTCATCTCTTGAAATTAGTTCATTTGAAAATGTTAAT 1544 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | || | |||||||| ||||||||| ||||| ||||||| | ||||||| Sbjct 1545 CCTGGCATAAGGCCACGTTTTTTTAACCAAAATATTGATGCAAAACTACCACTAAAGAAT 1604 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA----CTGTATTTATTGCT 18333 || || ||||| || || || || | | ||| || || ||| ||||| || Sbjct 1605 ATTCCTTCAACTGCTGCAAAAGCAATAATACGTTCTCCATAATTAGCTG-ATTTA---CT 1660 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 |||||| | | |||||| || ||| | ||| |||| | || || || Sbjct 1661 TGTTATCCAATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGTAATGTTTCAATTGC 1720 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 |||||| | |||| ||||||| | ||| |||||||| || || ||||| | || Sbjct 1721 ATTAAAAAGGAAATCTCTTTCTTTTGGATCCTTTATATATGTATCAATTAAAATGCTGTA 1780 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||| ||||| | ||||||||||||| ||||| | |||||| | | || || | Sbjct 1781 CATTTCGGAATGAACATTTTCCATAGCTATTTGAAATCCATAAAAACAACGCGCTTCAGT 1840 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||||| || | ||| | ||| || | ||| || ||||||||||| || | || Sbjct 1841 TACTTGAACTTCTTGACTAAAACGTTCAACAAGATTTTCGTTAACTATACCATCTGAAGC 1900 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 || |||||||| ||||||| | |||||||| ||| | | | |||||||| Sbjct 1901 AGCAAAAAATGCTAAAACATGTGATATGAAATGACGTTCTCCAGAAGTTAATTTGTTCCA 1960 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 || ||||| ||||||| ||||||||| || ||||||||||||| ||| |||| Sbjct 1961 GTCCGTCATATCCTTTGATAAATCAACTTCCTCAACCGTCCAAAAAGATGCTTCAGCCT 2019 >seq194330 Length=2535 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| || ||||| |||||||||||||| ||||| ||| ||| Sbjct 95 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACTATTACATTGGAAGTAGAATCTTC 36 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAG 155916 ||||| |||| ||| || ||| |||||| |||| Sbjct 35 TGATACTATTGAAAATGTAAAAGCTAAAATTCAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729938787557200