Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq139863 235 1e-56 seq194330 86.0 1e-11 >seq139863 Length=2592 Score = 235 bits (260), Expect = 1e-56 Identities = 478/713 (67%), Gaps = 19/713 (3%) Strand=Plus/Plus Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| || || |||||||||| |||||| ||||||| | ||||||||||| | | Sbjct 1311 AATAATCGGTCAGCAACAAATTCAATATATTGCGACATTAAATTGCAATTCATACCAATT 1370 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttg---ttta 39065 || || | |||||||| ||| | |||||||| ||| |||| || |||| | || Sbjct 1371 AAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGTTCAATTTTCACTGCTTCAGATATA 1430 Query 39066 attatcataattatattattttttgataatttatatttaatatgattcgcatataGTAAA 39125 ||| |||||| | | || ||| | ||| |||| ||| | || | | | |||| Sbjct 1431 ATTTCAATAATTCTTTCTTTACTTGGTT-TTTGTATTAAATGT--TT---AAACATTAAA 1484 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 ||||||||||| |||||| ||||| || || || || | |||||| ||| |||||| Sbjct 1485 CATGCAAAATCACAATGTAATCCTTCATCTCTTGAAATTAGTTCATTTGAAAATGTTAAT 1544 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 |||||||| | || | ||||| | ||||||||||||||||||||||| | ||||||| Sbjct 1545 CCTGGCATAAGGCCACGTTTTTTTAACCAAAATATTGATGCAAAACTACCACTAAAGAAT 1604 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTA----ATTTATCATC 39301 || || || || ||||| || || || | | ||||| | |||| ||||| | | Sbjct 1605 ATTCCTTCAACTGCTGCAAAAGCAATAATACGTTCTCCATA-ATTAGCTGATTTA-CTTG 1662 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 | ||||||| || |||||||| ||||||||||| | | | |||| |||| || || Sbjct 1663 T--TATCCAATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGTAATGTTTCAATTGC 1720 Query 39362 TTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATA 39421 ||||| | || || Sbjct 1721 ATTAAAAAGGAAATCTCTTTCTTTTGGATCCTTTATATATGTATCAATTAAAATGCTGTA 1780 Query 39422 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA 39481 |||||| ||||| ||| ||||||||||||||||||| |||||| | ||||| | Sbjct 1781 CATTTCGGAATGAACATTTTCCATAGCTATTTGAAATCCATAAAAACAACGCGCTTCAG- 1839 Query 39482 ATAC-TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 39540 ||| |||||||| | || |||||||| | ||| || || |||||||| || | Sbjct 1840 TTACTTGAACTTCTTGACTAAAACGTTCAACAAGATTTTCGTTAACTATACCATCTGAAG 1899 Query 39541 CTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCC 39600 | || || ||||||||||||| | || ||||| ||| | |||| || | || Sbjct 1900 CAGCAAAAAATGCTAAAACATGTGATATGAAATGACGTTCTCCAGAAGTTAATTTGTTCC 1959 Query 39601 AAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | | ||| ||||||||||| ||||| || | ||||||||||||||| Sbjct 1960 AGTCCGTCATATCCTTTGATAAATCAACTTCCTCAACCGTCCAAAAAGATGCT 2012 Score = 102 bits (112), Expect = 1e-16 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| |||||| |||||||||||| |||||||||||||| || || |||||||||| Sbjct 1126 ATTTTTGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGATATTA 1185 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATA 38923 | | ||||||| ||| |||||| |||||||| Sbjct 1186 ATTCCATAAAACTAAAAGGATTTGGTGTATTATA 1219 >seq194330 Length=2535 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 171976 CTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGG 172035 |||| |||||| ||||||||| |||||||| || ||||||||||| | ||||| | Sbjct 1 CTTGAATTTTAGCTTTTACATTTTCAATAGTATCAGAAGATTCTACTTCCAATGTAATAG 60 Query 172036 TTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| |||||||| ||||| | ||| || |||||| Sbjct 61 TTTTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902745117198600