Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq210017 168 2e-36 seq209511 127 6e-24 seq211207 123 7e-23 seq211115 102 2e-16 >seq210017 Length=1697 Score = 168 bits (186), Expect = 2e-36 Identities = 547/843 (65%), Gaps = 11/843 (1%) Strand=Plus/Plus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCT 155534 || ||| |||| ||||| ||||| |||||||||||| | | | || | || | | Sbjct 841 GGATAATAATTTACATCTATAATTTTATTTAAATTTTTCGTTATAATTTTTGAAACATGT 900 Query 155535 GCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGAC 155594 |||||| ||||||| |||||||||| | || |||||| |||| | |||||| Sbjct 901 TTTAATTTATTGAAGTCAAAGGTTTTATCCTGAGAAACGAACATATTAAGAGCTATAGAC 960 Query 155595 GCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAG 155653 |||| ||||||||| ||| | || | || || | || || ||||| ||| ||| | Sbjct 961 GCCAAATTACATACAGCAATTTCATCTGGCGAAGAA-TACTCCACAATTTCAGTGCATAA 1019 Query 155654 GTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTT 155713 ||| | || || || | ||| | ||| || ||| || ||||||||||| || Sbjct 1020 ATTACTGCAACGAATTGTTCCCACATTTTGCTGATTGCTTTTTCTATTACAAGCATCTTT 1079 Query 155714 GTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTC 155773 |||||| ||||| || ||||||||||| | ||||| || | ||| | ||| || Sbjct 1080 GTATAGCATGTAAGGTGTTCCTGTCTCAACCTGTGACTCAATAATTGCAAACCAAAGTGT 1139 Query 155774 ACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCG 155833 | || || |||| || || ||| || || |||||||| |||| | | Sbjct 1140 TTGTGCCTTTATTTTTTTATTAGCTCTACCCTCTTTTTCATATTTAGTATATAATTCTTC 1199 Query 155834 GTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA 155893 | | |||||||| | ||| | || |||||||||| ||||| | | ||||| Sbjct 1200 GAATTCCTCACCCCATACATCGTGTAAACCTGGGCACTTATGTGGGCACATTAAAGACCA 1259 Query 155894 AATTTTAT-TACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 || || | |||| || | | |||||| | ||| ||| | |||||| || Sbjct 1260 ---TTCATCGTCGGATTCAACTCTTTTCATAAACAAATCTGGTATCCACAAAGCATAAAA 1316 Query 155951 AAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 || || || || || ||||| | || ||||||| || ||||| ||||| Sbjct 1317 CAGATCTCTGGCTCGTGTTTCCTCTTTTCCAGTATTCTTCTTTAAGTCTAAAAATTCAAG 1376 Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACC 156067 ||||||| ||| ||| || ||||| || |||||| || || | || ||||| Sbjct 1377 TATATCAGAATGCCATGGTTCTAGATATATTGCAAAAGCTCCTGGCCTTTTATTTCCACC 1436 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGA 156127 || || || || |||||| |||||||| || | | |||||| | | || || || Sbjct 1437 TTGGTCAACGTATCGAGCAACATTATTGAAAACTCTCAACATAGGTACTAAGCCGTTAGA 1496 Query 156128 AGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCC 156187 | ||||| || || ||| | || | || |||| | ||||| || || || Sbjct 1497 AACCCCATTTGTACCAGCAATTGTTGTTCCTGTTGCACGAATACAATGAACATTTAAACC 1556 Query 156188 AATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTC 156247 ||| ||||| | | || ||||| || || | | || || || ||||||||||| Sbjct 1557 AATGCCACCAGCTGACTTTGAAATCATTGCACACTGTTCAACTGTTTTAAAAATACCTTC 1616 Query 156248 AATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCC 156307 ||||||||| | ||| | || || | | || || | |||||| ||| |||| | Sbjct 1617 TATAGAATCACTTGTCATAGTTAATAAAAAACATGATGAAAGTTGAGGACGTCGTGTAGC 1676 Query 156308 AGC 156310 ||| Sbjct 1677 AGC 1679 >seq209511 Length=1495 Score = 127 bits (140), Expect = 6e-24 Identities = 260/381 (68%), Gaps = 24/381 (6%) Strand=Plus/Minus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| || | |||||||| ||| ||| |||||||||||||| ||||||| | | || Sbjct 418 TAAAGCAGAGTCTAATACATCAACTCGGTTTGTTGCTGCCAT---AACAATAACTCCCGT 362 Query 288933 -TTGCTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATC 288989 || || ||| |||||||| ||| | || || ||||||||||| | || | Sbjct 361 ATTAGTTCCAAAACCATCCATTTCAACTAATAACTGGTTCAGTGTTTGTTCATTAGCACC 302 Query 288990 ATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTC 289049 | || || ||||| || | |||||| |||||||||||||||||| || Sbjct 301 ACTT---CCGATTGAAACAG---------TTCTTTTTCGACCAACAGCATCAATTTCATC 254 Query 289050 AATGAAAATCACACACGGAGAA--TTTTGTCTC-GCAATTGCAAATAATTCTCTTACACG 289106 ||| ||||| | ||| || | | |||| | | ||||| ||| | ||| | | | Sbjct 253 AATAAAAATGATACATGGTGCAGCTTTTTTAGCTGCAAT---AAACATTTCACGAATTCT 197 Query 289107 GGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGT 289166 || || |||| |||||| |||||||| ||||||||||| | || | | || ||||| Sbjct 196 TGAAGCACCAACTCCAACAAACATTTCTTCAAATTCAGAACCTGAAATTGAAAAGAATGG 137 Query 289167 TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 ||| ||||| || || || || | || | | || || ||||| || |||||||| Sbjct 136 GACACCAGCTTCTCCAGCAACAGCTTTTGCTAATAAAGTTTTTCCTGTCCCTGGTGGTCC 77 Query 289227 CTCTAATAGAACTCCCTTTGG 289247 || | ||||||||| || || Sbjct 76 TTCCATTAGAACTCCTTTCGG 56 >seq211207 Length=3839 Score = 123 bits (136), Expect = 7e-23 Identities = 211/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| | ||||| ||||||| |||||| | |||||| Sbjct 3287 ATTTCTGACTGTACCATCATAATTTACCATAACAGATTCCATAGCCTTGATAAGACGACG 3346 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||| || ||| || ||||| ||||| ||||| || ||||| |||| ||||| Sbjct 3347 TTGAATATAGCCGGTTTCAGCAGTTTTAACAGCAGTATCGATAAGACCTTCACGTCCACC 3406 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| || || | | ||| || || || | | | | ||| |||| || || Sbjct 3407 CATAGCGTGAAAATAAAACTCAGAGGGAGTAAGACCAGCCAAATATGAGTTCTCTACAAA 3466 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 || | | || || || ||| || |||| |||||||| || || || | | Sbjct 3467 CCCTCTAGATTCAGGTCCATAATCGTCTTTAATAAAATGTGGCAGAGTTCTTTTTCTAAA 3526 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 |||||| || ||||| || || || ||||| || || |||| ||| | ||| | ||| || Sbjct 3527 GCCGTAAGGAATACGTTTACCCTCTACGTTTTGTTGACCCACGCAAGCAATAACCTGTGA 3586 Query 302838 AATATT 302843 |||||| Sbjct 3587 AATATT 3592 >seq211115 Length=3236 Score = 102 bits (112), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 381173 ATTCACGCCGACTAATTATGACTGCGTGGAATCCTTGCCAGA--TTAATGATATGGCTTT 381230 ||||||| || | ||||| | ||| || ||||| |||| || |||| |||||||| Sbjct 565 ATTCACGTCGTCATATTATTAGTGCTTGAAATCCAG--CAGAAGTTGATGAGATGGCTTT 622 Query 381231 ACCACCTTGCCATATTTTATGCCAGTTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGC 381290 |||||| || |||| |||| ||||| ||||||| | |||||| ||||||||| Sbjct 623 ACCACCATGTCATACTTTAATTCAGTTTTATGTTTCAAAAGATAATAAATTAAGTTGTCA 682 Query 381291 TTTATATCAGCGTAGCGGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCTTCGTATTC 381350 |||||||| ||||| | |||||| | | || || || || ||||| || ||| | Sbjct 683 ATTATATCAACGTAGTGCGGATGTTTTTTTAGGAGTCCCTTTTAATATCGCAAGTTATGC 742 Query 381351 TATGCTTACTCGTTTAATTGCTCA 381374 | | | || | ||||||||| || Sbjct 743 TTTATTAACCCATTTAATTGCCCA 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467832655227829