Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq109337 89.7 6e-13 seq176103 84.2 3e-11 >seq109337 Length=3741 Score = 89.7 bits (98), Expect = 6e-13 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 114976 TATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATGGTATTGAAGTAGGAGCA 115035 ||||| ||||||||| ||||||| || ||| |||||||| |||||| || || || Sbjct 469 TATGGGCGAATTGCTCCAAGATCAGGCTTAGCGGTTAAAAATTTTATTGATGTTGGTGCT 528 Query 115036 GGTGTTGTTGATGAAGATTATCGAGATAATTTAATGGTTATTTTATATAACCATTCAGAT 115095 || || || |||||||||||||| | ||| || ||| |||||| || ||||| || Sbjct 529 GGAGTGGTAGATGAAGATTATCGTGGAAATGTAGGGGTGCTTTTATTCAATCATTCTGAA 588 Query 115096 GTTGATTTTAAAATTGAAGTTAAA---GATAGGATTGCGCAATTAATTGTTGAAAATGT 115151 || || | || || ||| || || ||||| ||||||||| |||||| || Sbjct 589 AAGGACTTCATGGTTAAA---AAAGGTGACAGAATTGCTCAATTAATTTGTGAAAAAGT 644 >seq176103 Length=4510 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 13/202 (6%) Strand=Plus/Minus Query 23087 AAGGAAATCACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTT 23146 |||| | || || ||||| || |||||||| ||| || | ||||| ||||| | Sbjct 2455 AAGGTGAACATGGTGATGGTGATCCATTTGATGGACCAAGTGGTACATTAGCACATGCAT 2396 Query 23147 TTTTCCCTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGGACAT 23206 ||| || | | ||| || ||||| ||||||||| | ||| |||||||| Sbjct 2395 ATTTTCCAGTTTATGGT------GGTGATGCACATTTTGATGATGCCGAACATTGGACAA 2342 Query 23207 TGTGGGAAGAAGATAGTGGTACTAGTTTATAT--AGTGTTAGTTTACATGAATTAGGACA 23264 | ||| | | |||||||||| | ||||| | ||| || ||||||||| ||||| Sbjct 2341 T-TGGT--GCATATAGTGGTACAAATTTATTTCAAGTAGCAGC--ACATGAATTTGGACA 2287 Query 23265 TTCTTTAGGTTTAAGTCATTCA 23286 ||| |||||||||||||||||| Sbjct 2286 TTCATTAGGTTTAAGTCATTCA 2265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630818902439960