Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq205685 170 6e-37 seq211215 138 4e-27 >seq205685 Length=35797 Score = 170 bits (188), Expect = 6e-37 Identities = 196/264 (74%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 40612 AATGACTTTCGATAAAATCTTACCGTTATTAAAAGAAGGaaaaaaaGCTTTTAGATTAGG 40671 ||||| ||||| | || || || || ||||||||||||||||||| || | ||| Sbjct 17481 AATGAAATTCGAACAGATTTTGCCATTCTTAAAAGAAGGAAAAAAAGTATTCCGCACAGG 17422 Query 40672 TTGGAATGGTAAAGAGATGTTTGTTGTGTTTCAAAAAGGTTATCCAGATGGGATTCCTTG 40731 |||||| || | || |||||| | || |||||||| |||||||| || || |||| Sbjct 17421 TTGGAACGGAAGAGGAATGTTTATAGTTCGCCAAAAAGGGTATCCAGAAGGTATCTCTTG 17362 Query 40732 TAATAAACAAACAGCAGAAGCTTGGGGGTTACAAGAGGGAGACTTATTTAAAGTAGAACC 40791 ||| | || || || |||||||||| ||| ||| || || ||||||||||| | || Sbjct 17361 TAACAGGCAGACTGCTGAAGCTTGGGATTTATCAGAAGGTGATTTATTTAAAGTCAATCC 17302 Query 40792 TTATTTGCAAATTCGCACTGCTCGTGGCACACATGCTATGTGGGTTCCATCTATCGGAGA 40851 ||||| ||||| | ||| ||| || ||||| |||||||| ||| ||| ||||| Sbjct 17301 GTATTTACAAATCAAAAATGCCGATGGAACTCATGCGATGTGGGTGCCAAGTATTGGAGA 17242 Query 40852 TATACTTGCTGATGATTGGGAAAT 40875 |||| |||| || ||||||||||| Sbjct 17241 TATATTTGCAGAAGATTGGGAAAT 17218 >seq211215 Length=3843 Score = 138 bits (152), Expect = 4e-27 Identities = 392/585 (67%), Gaps = 57/585 (10%) Strand=Plus/Plus Query 180783 TTACCAGGGAAATTAGCTGATTGT---ACTT------CTAAAACTTATTCTGAACTATAT 180833 |||||||| |||||||| |||||| || |||||| || ||||||| ||| Sbjct 2234 TTACCAGGTAAATTAGCAGATTGTGAAACAAAAGACGCTAAAA--TAG-CTGAACTTTAT 2290 Query 180834 ATTGTAGAAGGTGATTCTGCTGGTGGTTCTGCTAAGTCCGGAAGAAATCGTTACTACCAA 180893 ||||| ||||| |||||||||||||| |||||| || || ||||||| | | ||| Sbjct 2291 ATTGTTGAAGGGGATTCTGCTGGTGGAAGTGCTAAATCTGGTCGAAATCGAAAATTTCAA 2350 Query 180894 GCAATATTATCATTACGTGGCAAAATCTTAAACGTGGAGAAAAGTAGTTTAGAAAGAATG 180953 ||||| ||| ||||||| || ||||| ||||| || || ||||| | ||| || Sbjct 2351 GCAATTTTACCATTACGAGGAAAAATTTTAAATGTTGA-AAAAGCA------AAACAA-- 2401 Query 180954 CTTAA---CTCTGAAATGATTAAGAATATCATAGGTGCAGTTGGTACTGGCATTGATTCG 181010 |||| | ||||| || | ||| || | || || ||| ||||| | | Sbjct 2402 ATTAAAATATTTGAAA--ATAATGAA----ATTAATTCAATTATTAC-CGCATT-AGGAG 2453 Query 181011 CCAGGACAAAAG----TTCGAAT-ATGAAAAATTGCGATATGATAAAATTATTTTCATGT 181065 | | | |||| || ||| || ||||||| || ||| | || | ||| | ||| Sbjct 2454 CAGGTATTAAAGATAATTTTAATGATAAAAAATTACGTTATCAAAAGGTAATTATTATGA 2513 Query 181066 GTGATGCTGATGTCGATGGTTCTCATATTGAAGCACTACTACTAACGTTATTCTATAATT 181125 |||||||||||| |||||| | |||||| | || || | || || || ||| || Sbjct 2514 CTGATGCTGATGTTGATGGTGCACATATTCGAATTTTATTATTGACATTTTTTTATCGTT 2573 Query 181126 ATATGAGACCATTAATTGAAAAAGGGCATGTATATGCGGCTCAGCCACCATTATATCGAG 181185 |||||| | || |||||||| || || | ||| ||||| |||||| |||| | Sbjct 2574 ATATGAAAGATTTGATTGAAAATGGCAATATTTATATTGCTCAACCACCACTATA--CAA 2631 Query 181186 TAGTTAAAAAG--AA--CGAATCAATTTACCTTAAAGATGATCATGAGTTA--------- 181232 | | |||| | || || ||||| | |||| || |||| |||| ||| Sbjct 2632 AATTCAAAATGGTAATCAGATTCAATAT-GCTTATAG-TGATAATGAATTAGAACTTTAT 2689 Query 181233 AAAGAGTA--TACTAAGA-AACATCCAAACGCTGAAGTTCAACGCTTCAAAGGTCTTGGT 181289 ||||| | || ||| | || || ||| | | ||||||| | ||||| | || Sbjct 2690 AAAGAAGAATTATTAAAACAAAATAAAAATTATACAATTCAACGTTATAAAGGATTAGGA 2749 Query 181290 GAAATGAACGCAGATCAACTTTGGGAAACAACAATGGATCCAAAA 181334 |||||||| |||| ||| | || |||||||||||||||||| || Sbjct 2750 GAAATGAATCCAGAACAATTATGAGAAACAACAATGGATCCAGAA 2794 Score = 109 bits (120), Expect = 2e-18 Identities = 407/628 (65%), Gaps = 25/628 (4%) Strand=Plus/Plus Query 182188 GATCAAATGGAAAATGCTACTCTAAATTACGCAGTAAAAACAATTATTGAT---CGAGCT 182244 ||| ||||| |||||| | || |||| ||| | || |||||| | || || Sbjct 3011 GATGAAATGAAAAATGGCTTTTTAGATTATGCAATGT---CAGTTATTGTTTCACGTGCA 3067 Query 182245 TTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCTTTATGG 182304 | ||||||| | || |||||||||||| || || || ||| | ||||| | || Sbjct 3068 ATTCCTGATGTTCGTGATGGATTAAAACCAGTTCATCGCCGTATTATTTATGCAATGTGA 3127 Query 182305 GATTTAGGAATG-CTACCTCATAAACCATATCGAAAATCAGCAACAGTGAATGGCCACGT 182363 |||||| |||| || | |||||| | || |||||||| | | ||| | || Sbjct 3128 GATTTAAAAATGACTTAC-GATAAACAACATAAGAAATCAGCTCGAATTGTTGGTGAAGT 3186 Query 182364 AATGGGTAATTTCCATCCACATGGTGATAC------TTATGGTGTAATGGTAAATATGAC 182417 ||| || || | ||||| ||||||||||| ||||| | |||||| ||| | Sbjct 3187 AATTGGGAAATATCATCCCCATGGTGATACTGCTGTTTATGAAGCAATGGTTCGGATGGC 3246 Query 182418 AAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAACCCATT 182477 | | || || | ||| ||||| || ||||||| || || || |||||| || | Sbjct 3247 ACAAGATTTTTCTTATCGTTATCCTTTAATTGATGGGCATGGAAATTTTGGT---TCAAT 3303 Query 182478 AGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAGCACGTTTAGATAATCTTGGAAT 182537 |||||||||| | |||| || ||||| ||||| |||||| | ||| || | Sbjct 3304 GGATGGTGATGCTCCAGCGGCAATGCGATATACGGAAGCAAAAATGAGTAAAATT-GCTG 3362 Query 182538 GTTAA-TGCTACAAGATGTTGACAAAAAAGTTGTTGACTTCCAACCTAACTATTCTGAAG 182596 || || | | ||||| |||| |||| | | || | | || ||| ||| | Sbjct 3363 GTGAACTAATCAAAGATATTGA-AAAAGAAACAACAATTTTTA--TTGACAATTATGATG 3419 Query 182597 AAA---CAGAAGAACCAGTGATTTTACCAGCAGGGATTCCATACTTACTTATAAATGGAG 182653 | ||||||||| ||||||||| | ||||| | ||| | | ||||| | Sbjct 3420 GCAGTGAAGAAGAACCGACTTTTTTACCAGGATATTTTCCAAATTTATTAGTTAATGGTG 3479 Query 182654 CAACTGGTATTGCAACTGGTTATACTACTGACATACCTTCCCATAATTTAAGCGAAGTAA 182713 | | ||| ||||| ||| | ||| | || || | |||||||| | ||||||| Sbjct 3480 CTAGTGGAATTGCTGTTGGAATGGCAACTAATATTCCACCTCATAATTTGAATGAAGTAA 3539 Query 182714 TTGATGGTATCTTAAATTTAATTCAAAATCCTGAAATTGATATTCATGGGTTAATGAAAC 182773 |||||||| | | ||| ||||||||||||| | | || ||||||||| Sbjct 3540 TTGATGGTGTTATTGCGGTAACAAAAAATCCTGAAATAACAACTGTTGAATTAATGAAAA 3599 Query 182774 ACATTAAAGGTCCTGATTTACCTACTGG 182801 |||||||| |||||||| || || || Sbjct 3600 TTATTAAAGGACCTGATTTTCCAACGGG 3627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587600304084416