Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq139863 297 2e-75 seq107941 134 1e-26 >seq139863 Length=2592 Score = 297 bits (328), Expect = 2e-75 Identities = 497/708 (70%), Gaps = 18/708 (3%) Strand=Plus/Minus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| | || ||||||||||| | || || | | | |||| | Sbjct 2011 GCATCTTTTTGGACGGTTGAGGAAGTTGATTTATCAAAGGATATGACGGACTGGAACAAA 1952 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 |||| | |||| ||||| ||||| ||||| || ||||||||||| || Sbjct 1951 TTAACTTCTGGAGAACGTCATTTCATATCACATGTTTTAGCATTTTTTGCTGCTTCAGAT 1892 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || ||||| || |||||| | ||| || ||| |||||||||||| || | ||||| Sbjct 1891 GGTATAGTTAACGAAAATCTTGTTGAACGTTTTAGTCAAGAAGTTCAAGTAACTGAAGCG 1832 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||||||||| |||||||| || || |||||| ||||||| ||||||||||| || Sbjct 1831 CGTTGTTTTTATGGATTTCAAATAGCTATGGAAAATGTTCATTCCGAAATGTACAGCATT 1772 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT----TGTTTAATGCGAT 44052 | || ||||| || || || ||| || |||| | ||| | |||||||| || Sbjct 1771 TTAATTGATACATATATAAAGGAT--CCAAAAGAA--AGAGATTTCCTTTTTAATGCAAT 1716 Query 44053 AGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA-ATTCA 44110 |||||| |||| || | ||||| | ||||| || ||||| | | ||||||| | | Sbjct 1715 TGAAACATTACCATGTG-TTAAAAAAAAAGCTGATTGGGCATTAGATTGGATAACAAGTA 1657 Query 44111 AAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 ||| | | || ||||||||| || | || ||||||| || ||||| || |||||| Sbjct 1656 AATCAGCTAATTATGGAGAACGTATTATTGCTTTTGCAGCAGTTGAAGGAATATTCTTTA 1597 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 || ||||| | |||||||||||||| ||||| || | ||||| || || || | Sbjct 1596 GTGGTAGTTTTGCATCAATATTTTGGTTAAAAAAACGTGGCCTTATGCCAGGATTAACAT 1537 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 |||||||||| |||| | |||||||| |||||||| |||||||| || || | Sbjct 1536 TTTCAAATGAACTAATTTCAAGAGATGAAGGATTACATTGTGATTTTGCATGTTTAATGT 1477 Query 44289 TTGGATATCTAGGAGACGATAAGC-CTTCATGTAAGACAATTACAGATATTGTTGTAGAG 44347 || | || || | || | || | | | | ||| ||||| || ||| | || Sbjct 1476 TTAAACATTTA--ATACAAAAACCAAGTAAAGAAAG--AATTATTGAAATTATATCTGAA 1421 Query 44348 GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG 44407 ||||| || || |||||||||||| | || |||||||||||||||||||| || ||| Sbjct 1420 GCAGTGAAAATTGAACAAGAATTTTTAACTGACGCATTACCTGTAAATTTAATTGGTATG 1361 Query 44408 AATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTA 44455 ||| ||| ||| ||||||||||||| |||| || || ||| Sbjct 1360 AATTGCAATTTAATGTCGCAATATATTGAATTTGTTGCTGACCGATTA 1313 >seq107941 Length=6085 Score = 134 bits (148), Expect = 1e-26 Identities = 201/287 (70%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 19534 GGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAA 19593 |||| || ||| | ||||||||||||| | |||||| | |||||||| ||||| Sbjct 4007 GGGCCAAATAGTGGTCTGCACATTATAATTTTTGATGAAATTGACGCAATATGTAAAGCC 4066 Query 19594 AGAGGTTC---------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTG 19644 ||||| || || || ||| || ||||| ||||| || |||||||| || Sbjct 4067 AGAGGATCTGTTGCTGGTGCTGGTGGTGGGGTGCATGATACTGTAGTAAATCAACTACTA 4126 Query 19645 TCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 ||||| | || |||||| | ||||| ||||||||| |||| ||||| ||||| |||||| Sbjct 4127 GCAAAAATTGATGGTGTTGAACAACTTAATAATATTCTAGTCATTGGTATGACAAATAGA 4186 Query 19705 CTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 | || | || || || ||| | ||||| ||||| || ||| || | || ||||| Sbjct 4187 CGTGATATGATTGATGAGGCTTTACTTCGACCTGGTCGATTAGAAGTACAAATGGAAATC 4246 Query 19765 AACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | ||||| ||||| ||| | || |||| | || || ||||| Sbjct 4247 AGTTTACCAAATGAACAGGGAAGAGTCCAAATCCTTAATATTCATAC 4293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396432381508585