Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq210017 105 8e-18 seq210675 93.3 5e-14 >seq210017 Length=1697 Score = 105 bits (116), Expect = 8e-18 Identities = 454/708 (64%), Gaps = 35/708 (5%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || |||| ||||||||||||||| ||||||| |||||||| ||||||||||| || Sbjct 427 TATATATTTGATGTGTATGGTTCAAATGATTCATTGTTACCCAAAATTTGTGCGGTTGAT 486 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-----TCTCCTTGATGC 110822 ||||||||||||||||| || || | || |||| ||| | | || || | Sbjct 487 GCTGTTGGCATTGGTGCAATTAATAACGAATTTCGAACACCATGTTGAGCAATTTTATCC 546 Query 110823 GTTCCTTGAGAAC-ATCCCAGTCGTAGTTGAGCTTGG-TTTCACCTTCCCACATGTCAAA 110880 || || ||| | |||||| || | | | || ||| | | |||||||||| | Sbjct 547 TTTAATTCAGACCAATCCCA----TAAATTTGTTGGGATTTTA---TTCCACATGTCATA 599 Query 110881 CTG--AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938 || || |||| | || ||||| || ||| | |||||||| | ||| || Sbjct 600 TTGTAAAATACCCTTACTTACAGGGGAG--CCTTCATATGTTTCATAAGGACCCAATTCT 657 Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 | ||| |||||||| || || || | || | | || || |||||||| || | Sbjct 658 TGAGCTAATTCACAACTAGCTTCTAAGGCGCCATAGTAAATAGTTTCAAAAATTTGTTGG 717 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 |||| || ||||| | ||| | | | || | ||||| |||| || Sbjct 718 TTCAATAATTTAGCTTCTTTGCTTTCATAAGGAAAACGCATTAGTATAAAAGCATCAGCA 777 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 || || || || || | ||||| ||||| || || | ||| || ||| || Sbjct 778 AGTCCCTGTACCCCAATTCCAATTGGTCTATGCCGTAAATTTGATTTTTTAGCTTCGGGG 837 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || |||||| ||||| || || | | |||| |||||| || | ||| |||| | Sbjct 838 ACAGGATAATAATTTACATCTATAATTTTATTTAAATTTTTCGTTATAATTTTTGAAA-- 895 Query 111179 TCATG----AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 |||| || || || | | ||||| || | || | | || || | ||| Sbjct 896 -CATGTTTTAATTTATTGA-AGTCAAAGGT---TTTATCCTGAGAAACGAACATATTAAG 950 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || || || |||||||| || ||||| | ||||| | ||||| | |||||| Sbjct 951 AGCTATAGACGCCAAATTACATACAGCAATTTCATCTGGCGAAGAATACTCCACAATTTC 1010 Query 111295 TGTACATAAGT---TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || ||||| | || ||| ||| || |||| ||| | || || || || | || Sbjct 1011 AGTGCATAAATTACTGCAAC---GAATTGTTCCCACATTTTGCTGATTGCTTTTTCTATT 1067 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 || ||||| ||||| |||||||| || || || ||||| |||||| Sbjct 1068 ACAAGCATCTTTGTATAGCATGTAAGGTGTTCCTGTCTCAACCTGTGA 1115 >seq210675 Length=2205 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || || | | ||||||||||||||||| | || || || | ||||| ||| Sbjct 647 TCTTTTCCTCCAGTTAATCGCGTACCAAATTGACCTCTGGGTTCTAGTAAATTAATATTG 706 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCA-AGGGACACTTCACC 181924 |||||||| || | | | ||||| ||||| || || | || || || ||| || Sbjct 707 TTTGAACCAATAAAATTCTGTGCCAAATTAACAATTGT-TGAACACAGTGATGTTTCGCC 765 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCA 181982 |||||| ||||||||| | |||||||| || | ||||| ||||| || || | |||| Sbjct 766 GTGGTGATAAGCTGACATTTCCGCAACTGATCCGGCCAATTGTGCAACTTTTACTTCA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626373077023200