Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028859.1 Length=42881 Score E Sequences producing significant alignments: (Bits) Value seq205685 161 3e-35 >seq205685 Length=35797 Score = 161 bits (178), Expect = 3e-35 Identities = 354/519 (68%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 17488 TATATACGGACAAACAAATTGAAATATTGAAGCAAACGCAAAAACGAGATTGGTTTATGT 17547 |||||| | ||||| ||||| || ||| |||| ||||| |||||||||||| Sbjct 21514 TATATAACGCAAAACAGATTGAGGTACTGACAGAAACAATAAAACAAGATTGGTTTAT-- 21457 Query 17548 TAA--TTAAT-CACGGAGCAAAGCGTACAGGTAAAACAATATTAAACAATGACTTATTTT 17604 || || | || ||||| ||||| |||||||||| | | |||| |||||||||||| Sbjct 21456 -AACGTTGCTGCATGGAGCGAAGCGGTCAGGTAAAACGAAAATAAATAATGACTTATTTC 21398 Query 17605 TACGTGAGTTAATGCGTGTGCGAAAGATAGCAGACGAAGAAGG---AATTGAGACACCTC 17661 | |||||| ||||| |||| ||||| || || ||||| || ||| || Sbjct 21397 TGTTCGAGTTACGACGTGTTAGAAAAATAGCCGATGACGAAGGCGTAAAAGAG---CCGA 21341 Query 17662 AATATATACTTGCTGGTGCAAC-ATTAGGTACGATTCaaaaaaaCGTACTAATAGAGTTA 17720 || ||| | ||||||| | | | | ||||||||||| ||| || | |||| || Sbjct 21340 TGTACATATTAGCTGGTGTTTCCAGTTCG-ACGATTCAAAAGAACATATTGCAAGAGCTA 21282 Query 17721 ACTAACAAATATGGCATTGAGTTTAATTTTGATAAATAT--AATTCATTCATGTTATTTG 17778 ||| | || ||| || ||| | ||| ||| | || | || | ||| |||| Sbjct 21281 TATAATATGTACAACATCGAACCTAAGTATGACAAACACGGAAAT--TTTAAGTTGTTTG 21224 Query 17779 GCGTTCAAGTGGTTCAGACAGGTCACAGTAAAG-TAAGTGGTATAGGAGCTATACGTGGT 17837 |||| | ||||| || | | || | ||| | | || | |||||||| | ||| Sbjct 21223 GCGTGAAGGTGGTACAAGCCTAT-ACGGGAAATATTGGAGGCGTTGGAGCTATTAGAGGT 21165 Query 17838 ATGACATCGTTTGGTGCATATATCAATGAAGCGTCGTTAGCGCATGAAGAGGTGTTTGAC 17897 |||||| | || ||||| ||| | || ||||||||| |||| | ||| ||||||| Sbjct 21164 ATGACAGCTTTCGGTGCTTATGTAAACGAAGCGTCGCTAGCCAAGCGAGAAGTGTTTGCA 21105 Query 17898 GAGATTAAGTCACGTTGTAGTGGAACTGGTGCAAGAATATTGGTAGATACCAACCCTGAC 17957 || ||| || |||||| ||||||||||||||| ||||| | ||||| ||||| || Sbjct 21104 GAAATTGTATCGCGTTGTTCTGGAACTGGTGCAAGGATATTAGGCGATACAAACCCAGAT 21045 Query 17958 CATCCCGAGCATTGGTTGTTGAAAGATTATATTGAAAAT 17996 | || || |||||||| || || || ||||| ||| Sbjct 21044 AACCCAGAACATTGGTTAAAAAAGGAATACATTGATAAT 21006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136753568739222