Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq211115 246 3e-60 >seq211115 Length=3236 Score = 246 bits (272), Expect = 3e-60 Identities = 517/754 (69%), Gaps = 20/754 (3%) Strand=Plus/Minus Query 48729 TTCATTTGCATTTCCCACTTCATATCCTAATGGCTGATTCATATCTGTAATGACTGCA-- 48786 |||| ||||||| || | | ||||||||| | |||||| ||||| | ||| Sbjct 3042 TTCAATTGCATTACCGATAGTACGTCCTAATGGTTCTGTCATATTAGTAATTTCAGCAGC 2983 Query 48787 ATTGTTTTTCGATTCAGATTTTTTCCAATATCAACCATTTCTTGTGCTAATGCTTTAGAG 48846 | | || || ||| | || |||||| |||||||| |||||||||| || | | Sbjct 2982 AATCTTCTT--ATTAAATTTAATTCCAAGTTCAACCATAATTTGTGCTAAT--TTCCGTG 2927 Query 48847 --TCTTCTAATGTTTTCATAAATGCTCCATTTCCTGTTTTAACATCTAATACAATTGCAT 48904 || || |||||||||||| || ||| | || |||||||||||| |||||| ||| Sbjct 2926 CATCAGATATTGTTTTCATAAAAGCGCCACTACCACATTTAACATCTAACACAATTCCAT 2867 Query 48905 CTGCTCCCATT-GCGAtttttttACTCATAATGCTACTAGCAATTAATGGAATTGAATTA 48963 | || ||| | || |||||||||| |||||| || || | |||||| | ||||| | Sbjct 2866 CA-CTACCAGTCGCAATTTTTTTACACATAATACTTGCTGCCACTAATGGTAATGAATCA 2808 Query 48964 ACTGTTCCAGTAACATCGCGTAATGCATATAATTTTTTGTCGGCAGGCACTAAAATTCCA 49023 |||||| | || ||||| ||||| ||||| | ||||| || ||||| || | | | || Sbjct 2807 ACTGTTGCCGTCACATCCCGTAAGGCATAAATCTTTTTATCAGCAGGAACAAGATTATCA 2748 Query 49024 CTTTGTCCAACTAATGCGAT---TTTATGTGTATTAACTTGATTAATAAATTGTTCTCTT 49080 ||| | | |||| ||| ||| | | |||||| | |||||| | Sbjct 2747 GATTGAGCCA-TAATT-GATAAATTTGTTT-TATTAATAACACCCTTAAATTCATTAAAA 2691 Query 49081 GTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTTGTCAATTGTTCCTCCTGTGTGC 49140 | | ||| || ||||| || | ||| ||| || || ||||||||||||||||| || Sbjct 2690 GAAAGTTCAACTTTAAAACCGGGAATACTTTCCAACTTATCAATTGTTCCTCCTGTTTGG 2631 Query 49141 CCTAAACCTCTACCTGACATTTTAGCAACAGGAATACCCAAAGAAGCAACCAATGGAGCA 49200 ||||| || | ||||||||||| | || | ||| || | |||||| || || ||| Sbjct 2630 CCTAATCCCCGTCCTGACATTTTTGTCACTTTTAAACCAAATGCAGCAACTAAAGGTGCA 2571 Query 49201 ACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGAATGTTTATCTACTTTTACACCT 49260 |||||||||| ||||| || |||||||| | ||||| ||||| ||||| | ||| Sbjct 2570 TAAATTAAACTAACCTTATCACCAACTCCACCAGAAGAATGCTTATCAACTTTAAAACCA 2511 Query 49261 TCGATTTTTGATAGGTCAATTGTTTCACCAGAATTAATCATGGCATTAGTTAAGGCAGAG 49320 ||| | || ||| | ||| || ||||||||||| || | |||||| || Sbjct 2510 GGAATTGTACTTAAATCATATACTTCCCCTGAATTAATCATTGCTTCAGTTAAAAACGAA 2451 Query 49321 ATTTCTTCTTTAGACATGCCATTG-AAATAAATTGCCATTAACATAGAAGCCATTTGATA 49379 |||||| ||||| |||| ||||||||||||||||| | || | ||||||||| Sbjct 2450 ATTTCTGTAACTGACAT-TGATTGAAAATAAATTGCCATTAAAAAAGCTGACATTTGATA 2392 Query 49380 ATCAGGAAT-GTCGCCGTTCGTGTAACCGCGGATGATAAAATCAATTTCTTCTTTTGAAA 49438 ||| ||||| | | | | || || || || ||||| |||||||||| ||| | Sbjct 2391 ATCTGGAATAATTTCTGAT-GTATATCCTTTGACAATAAAGCTAATTTCTTCTCGTGATA 2333 Query 49439 GCTCATAACCATCCCGTTTTTTCGCAATTAAATC 49472 ||| | |||| ||||| ||||||| || Sbjct 2332 ACTCTTGTCCATTTTTCTTTTTATCAATTAATTC 2299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450831591328560