Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq211115 152 4e-32 >seq211115 Length=3236 Score = 152 bits (168), Expect = 4e-32 Identities = 208/289 (72%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 126080 ATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCC 126139 |||||| ||||||||| |||||| || ||||| | || || || || | | || Sbjct 833 ATGATTTTTATAAATATGACAATCTCCTAAAGTATGGACAAAATCGCCAACATTTAAACC 774 Query 126140 ACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACC 126199 | ||| |||| | ||| || | ||||||||||||||| ||||| ||||| || || Sbjct 773 AACAACTTGGGCAATTAAATGGGTTAATAAAGCATAACTTGCGATATTAAAAGGGACTCC 714 Query 126200 TAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGT---AC 126256 |||||| | ||| ||||| | |||||||||||||||| |||||||| |||| | || Sbjct 713 TAAAAAAACATCCGCACTACGTTGATATAATTGACAACTTAATTTATTATCTTTTGAAAC 654 Query 126257 GTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATT 126316 ||||| |||| | || || || |||||||| ||||| ||| | ||| | ||||| Sbjct 653 ATAAAACTGAATTAAAGTATGACATGGTGGTAAAGCCATCTCATCAACTTCTGCTGGATT 594 Query 126317 CCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTT--AATTT 126363 || || || ||| ||||| || || | |||||| |||| ||||| Sbjct 593 TCAAGCACTAATAATATGACGACGTGAATATGGATTCTTTTTTAAATTT 545 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126602 ATAATTTTCAAATGCCCATTCATTCCATATATTGTTATTATATTTAAGTAGGTATTGAAT 126661 ||| |||||| ||| |||||||| || || || || | | || |||| ||| Sbjct 386 ATATTTTTCATATGGTCATTCATTTCAAATTCGAACATCATGATCTACTAAATATTTAAT 327 Query 126662 GTTTGTATCTCCTTTAATAAACCATAATAATTCAGTTGCTACTAATTTAAAAGAAACCTT 126721 || ||||| ||||||||||| |||||||||||| ||||| |||||||| ||| || Sbjct 326 ATTAGTATCGCCTTTAATAAATCATAATAATTCATAAACTACTGATTTAAAATGAACTTT 267 Query 126722 TTTGGTTGTAAGTAAAGGAAACCCTTTGGTTAAATCGAAACGCAATTGATGCCCAAATTT 126781 ||| ||||| | | ||||| |||||| |||||| ||||||| ||||| ||||| Sbjct 266 TTTTGTTGTTAAAAGTGGAAAGCCTTTGCTTAAATTAAAACGCATTTGATAACCAAAAGA 207 Query 126782 GGAAATTGTCCCGGTATGTGTGCGATCATC 126811 |||||||| || |||| ||| |||||||| Sbjct 206 AGAAATTGTTCCCGTATTTGTTCGATCATC 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407546085082619