Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq211307 143 6e-29 seq180733 89.7 1e-12 seq158080 89.7 1e-12 seq13835 89.7 1e-12 seq148620 86.0 1e-11 seq91257 86.0 1e-11 seq18325 86.0 1e-11 >seq211307 Length=6023 Score = 143 bits (158), Expect = 6e-29 Identities = 258/373 (69%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 301420 ATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACAT 301479 |||| ||| | || || ||| | || || || || || || ||||| || ||||||| Sbjct 688 ATGCAAAAATTTGATCCATATTTAAATGTTGACCCTGGAACAATGAGTCCTTATCAACAT 629 Query 301480 GGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAA 301539 || ||||| || || || | |||||||||||||| ||| | ||| | || || || ||| Sbjct 628 GGTGAAGTTTTTGTAACAGCAGATGGTGCTGAAACAGATTTAGATTTAGGACATTATGAA 569 Query 301540 CGTTTCACTTCATTAACCCTTAA-GCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTT 301598 ||||| | || || || |||| ||| ||| |||| | || | | | ||| Sbjct 568 CGTTTTA-TTGATGAAAATTTAACAAAAGAATCAAATATTACTTCAGGACGAATATATAA 510 Query 301599 AAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCC 301658 ||| || || ||||| |||||| || ||| || ||| || ||||||||||| Sbjct 509 AAATGTAATTGAAAAAGAACGCCGTGGGGAATATGAAGGTGGGACAGTTCAAGTTGTTCC 450 Query 301659 CCACATCACCGATGAAATCAAAAGAAGAATTCACATTGCGGC-TGA-----AAAATCAGA 301712 || | || ||||||| |||| | | || | |||||| | | |||| |||| Sbjct 449 TCATGTTACAAATGAAATTAAAAAGAAAGTTTATCATGCGGCATCAACATCAAAAGCAGA 390 Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772 ||| ||||| |||||||| || || || || ||||| |||||| | |||||||| || Sbjct 389 TATTATTATTACTGAAATTGGGGGGACAGTTGGTGATATTGAATCGTTGCCTTTTATTGA 330 Query 301773 AGCGATTCGTCAA 301785 ||| ||||||||| Sbjct 329 AGCAATTCGTCAA 317 >seq180733 Length=2293 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1395 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1451 >seq158080 Length=2575 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2116 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2172 >seq13835 Length=9045 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 7027 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 6971 >seq148620 Length=1050 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 874 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 818 >seq91257 Length=3616 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1763 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1707 >seq18325 Length=2424 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 107 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1043905154597318