Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq139863 412 4e-110 seq25052 183 3e-41 >seq139863 Length=2592 Score = 412 bits (456), Expect = 4e-110 Identities = 507/689 (74%), Gaps = 4/689 (1%) Strand=Plus/Plus Query 23344 TCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTACT 23403 || || ||||||||||||||||| |||| |||| | || ||||| |||| ||||| Sbjct 1320 TCAGCAACAAATTCAATATATTGCGACATTAAATTGCAATTCATACCAATTAAATTTACA 1379 Query 23404 GGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACA 23463 || | || ||| ||| ||| || |||||| || || || || |||| || | Sbjct 1380 GGTAATGCGTCAGTTAAAAATTCTTGTTCAATTTTCACTGCTTCAGATATAATTTCAATA 1439 Query 23464 ATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACAA 23523 || ||||| ||| ||| | | |||||| ||||||| ||||||||||||||||||| Sbjct 1440 ATTCTTTCTTTACTTGGTTTTTGTATTAAATGTTTAAACATTAAACATGCAAAATCACAA 1499 Query 23524 TGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCT 23583 |||| |||||||| || ||| | |||||| |||||||||||||||||||| | || Sbjct 1500 TGTAATCCTTCATCTCTTGAAATTAGTTCATTTGAAAATGTTAATCCTGGCATAAGGCCA 1559 Query 23584 CGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCC 23643 |||||||| | ||||||||||| ||||| || |||||| || || ||||| || Sbjct 1560 CGTTTTTTTAACCAAAATATTGATGCAAAACTACCACTAAAGAATATTCCTTCAACTGCT 1619 Query 23644 GCAAAGGCCACAAGACGTGTACCAAATGTTGC--ATTATAATCAGAAATCCAtttttttG 23701 ||||| || | || |||| ||| | | || ||| || | | ||||| | | || Sbjct 1620 GCAAAAGCAATAATACGTTCTCCATAATTAGCTGATT-TACTT-GTTATCCAATCTAATG 1677 Query 23702 TCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTT 23761 ||||| ||| || ||| ||||| | |||||||||||| || || || ||| | Sbjct 1678 CCCAATCAGCTTTTTTTTTAACACATGGTAATGTTTCAATTGCATTAAAAAGGAAATCTC 1737 Query 23762 TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATAT 23821 |||||| ||| |||||||||||||||||| | || |||||||| ||||||| || Sbjct 1738 TTTCTTTTGGATCCTTTATATATGTATCAATTAAAATGCTGTACATTTCGGAATGAACAT 1797 Query 23822 TTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAA 23881 |||| ||||| || ||||| ||||||||||| | ||||||| | |||||| || | | Sbjct 1798 TTTCCATAGCTATTTGAAATCCATAAAAACAACGCGCTTCAGTTACTTGAACTTCTTGAC 1857 Query 23882 AAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAA 23941 ||| | || | | | |||||||||||| |||||||| ||||||||| || || | || Sbjct 1858 TAAAACGTTCAACAAGATTTTCGTTAACTATACCATCTGAAGCAGCAAAAAATGCTAAAA 1917 Query 23942 CATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTG 24001 ||| | ||| ||||| | ||| ||| | |||||| ||||| || | ||||| |||| Sbjct 1918 CATGTGATATGAAATGACGTTCTCCAGAAGTTAATTTGTTCCAGTCCGTCATATCCTTTG 1977 Query 24002 ATAAATCAACTTCATCAACTGTCCAAAAA 24030 ||||||||||||| ||||| ||||||||| Sbjct 1978 ATAAATCAACTTCCTCAACCGTCCAAAAA 2006 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 23212 CCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGAT 23271 |||||||| |||||||| ||||| | |||| ||||| ||||| ||||| || |||||| Sbjct 1123 CCCATTTT-TGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGAT 1181 Query 23272 ATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATA 23311 || |||||||||| ||| ||||| | |||||||||| Sbjct 1182 ATTAATTCCATAAAACTAAAAGGATTTGGTGTATTATATA 1221 >seq25052 Length=3952 Score = 183 bits (202), Expect = 3e-41 Identities = 348/498 (70%), Gaps = 27/498 (5%) Strand=Plus/Plus Query 128445 GGTTTAGAGGGAGTTATCTTAAAATACCCAAATGAATTATATATACCAGGTAAAAGAAAA 128504 |||||||| || || | || ||| | || | ||||||| ||| || ||| || Sbjct 2487 GGTTTAGAAGGTCTTGTATTGAAAAATGTAACTAGTTTATATAAACCGGGAAAACGAGGT 2546 Query 128505 TGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGCAGATTCTGCTGATTTA 128564 |||||||| | |||| ||||||||| | | ||| |||||| ||||| ||||||||| Sbjct 2547 TGGTTAAAAATTAAAAAAGATTATTTATTTCAAGGACAAATGGCTGATTCAGCTGATTTA 2606 Query 128565 GTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGAATAAAATCTATATTT 128624 ||| | |||||||| | | ||||| ||||||| | || || || | ||||||| Sbjct 2607 GTTATATTGGGTGCTTGGTTTGGTACTGGTAAAA---AAGGTGGTATGTTAAGTATATTT 2663 Query 128625 CTTATGGGATGTTATGATAAAGAAACAGATACATGGAAAACTGTTACAAAATGCTCA--- 128681 | ||||||| ||||||| | | ||| | |||| |||||| |||||| | ||| Sbjct 2664 TTGATGGGATCATATGATACAAATACAAAATTATGGGGAACTGTAACAAAA-GTTCATTC 2722 Query 128682 GGGTTTA-ATGATGAAACATTAAAAGAATTAC--AATCAATTG-ATA---TGATTAAAAT 128734 |||||| ||||| |||| | || ||||| ||| ||||| ||| | || || Sbjct 2723 TGGTTTAGATGATTCAACAATGGAATCATTACAAAATGAATTGAATACATTAATGGAACG 2782 Query 128735 TAGTAAAAATAAAGATAAAATTCCAAATTGG-TTAA---TTATTAACAGTATTCATTATC 128790 | |||| | |||| || | ||||| ||| |||| || | |||| ||| || | Sbjct 2783 TTGTAATAGTAAA---AATTTACCAAAATGGCTTAATGTTTCTAAACA--ATTAAT--AC 2835 Query 128791 CGGATTTTATTATCAAAGATCCAAAATCATCT-CCTGTTTGGGAAATAATTGGATATGAA 128849 ||||||||||| ||| |||| | | || | ||||| |||||||| | ||| |||| Sbjct 2836 CGGATTTTATTGCAAAAAATCC-ATTTGATATGCCTGTATGGGAAATTACTGGTGCTGAA 2894 Query 128850 TTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGGTTTCCTAGATGCAAA 128909 |||||||||||| | ||||| || ||||| ||||| ||||| |||||| | | | Sbjct 2895 TTTACAAAATCAGAAGTACATACTGCAAATGGTATATCTATTAGATTTCCTCGTATAACA 2954 Query 128910 AATATACGAAATGATAAA 128927 || || ||| |||||||| Sbjct 2955 AAAATTCGAGATGATAAA 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520110509003800