Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq15 84.2 5e-11 >seq15 Length=2982310 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/278 (68%), Gaps = 12/278 (4%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCC-TCGACCC 281794 ||||| ||| | || || | ||||| || ||| |||||||| || | || ||| || Sbjct 1250089 AGTTTGGTGTAAATGTAACGAGCACTGGCAGCGTCCTTACCACC-TGTACCCCTCGTACC 1250147 Query 281795 AAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAG 281854 || ||||| ||| | | |||||||||||||| || || ||| ||| |||| Sbjct 1250148 GAATTGACCAATGGGCTGTAGCAGATTAATGTTATTGCTGCCCACAAAATTCTGTGCCAA 1250207 Query 281855 GTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAAC 281914 || |||||||| || || || | |||||||| |||||| | ||| ||||| Sbjct 1250208 ATTAACGATTGTGGCCGCGAGGGACATTTCACCGTGATGATAGCCCGACATTTCAGCAAC 1250267 Query 281915 ATAACCACTGAACTGTGCTACCTTCACGTC--TGATGTCAAGTTGCGTTTGAAAGCGCAA 281972 |||||| | || ||||||||||| || | | ||| || | ||| || |||| Sbjct 1250268 GGCACCACTCAGTTGCGCTACCTTCACTTCCTTCTTATCA--TTCCTTTTAAA---GCAA 1250322 Query 281973 ---TATAATACTTTTCGTTGAGAAGGCTTGAAACCATC 282007 ||||||||||||| || ||| || |||||||| Sbjct 1250323 GTGTATAATACTTTTCTCTGTCCAGGTTTTAAACCATC 1250360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057750201900350