Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq203 125 8e-24 seq2 111 2e-19 >seq203 Length=886859 Score = 125 bits (138), Expect = 8e-24 Identities = 216/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || ||||| ||||| ||||| ||||| | | | ||| | |||||| || |||||||| Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | | || || | ||||| ||||||||||| | || | || || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 ||||||| | |||||||| | ||||| || ||||||||| || | || | | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 54278 CCACTGGCACGAATATT-ACTA-ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 ||| | |||||||| || || | || ||||| || || ||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTG--AGACCAATGCCTCCTGCTGATTTACTAATTA 357223 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 || |||| |||||| |||||| | || || || ||||| || || |||| | || | Sbjct 357224 CGGCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCA 357283 Query 54396 GAAAACAGCT 54405 |||||| || Sbjct 357284 AAAAACAACT 357293 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || ||||| || || || ||| | ||| ||| | || ||||| || || ||||| Sbjct 357363 CTGGACATCTGTTGGCGTTGAGTACAGGCAGAAAAAAGCGTTGGAGACGCATGTGTAAAG 357422 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAAT 54522 | ||||| | | ||||| || || ||| || ||| | ||| | ||| || || Sbjct 357423 TAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTGTCAAGATCTTCCTTG-TGGAT 357481 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 | || || || ||||||| ||| |||||||| | |||||| | || | || ||||| Sbjct 357482 GGCAACAGCAACTCGCATTATCATATGCTGAGGACGTTCAACTACTTTATCATTAATTTT 357541 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 | | ||| | | || ||||||||||| |||||||| ||||| |||||||| || Sbjct 357542 TAAAAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATAATTGTAACCAAAGTCTCTATC 357601 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 ||||| || | || || ||| ||||||| | ||| Sbjct 357602 ATAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||||| ||||||||| |||||||| ||||| | | Sbjct 357809 CACTGAATACTTTCTTGGTTTCTTTGTGTAAATTTGATACTGCTATTCTGGCGGCCAATA 357868 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| | |||| || || || || || | || |||| ||| | || | Sbjct 357869 TAGCATAATCTGCGTGTTTGGTTGTCATCGTAGCAGCAGTCTCTGCTGCCAGGTTATCAA 357928 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 54927 ||| || ||||| |||||| ||| | || | |||||| Sbjct 357929 GTTCCACTGTTGTGACTCCAGAATAAAGCCCATTGATAAC 357968 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176 || |||| | || | | |||||| |||||||| | || ||||| || || | ||| | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236 | ||| |||||||| ||||| ||||| || ||||||||||| || | |||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 53237 GTTGATGCAGTCGGCATAGGTGC 53259 || ||||| || ||||| || || Sbjct 355892 GTCGATGCTGTTGGCATCGGAGC 355914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 52922 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 52981 || || || || || | ||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 355514 GCCATGTGTATGTTGAGAGATTGAGACTGATCAATAAAAGCTCCTCTGTCCGCAGCCATT 355573 Query 52982 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 53022 |||| || |||||||| | ||||||||||| |||||| || Sbjct 355574 TTTAAAATTGTCTTTTGAGAAATTTCCCAAACAGTTTTGTA 355614 >seq2 Length=6207162 Score = 111 bits (122), Expect = 2e-19 Identities = 343/527 (65%), Gaps = 9/527 (2%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 ||||||| | ||| || || ||||| | | || ||| || | ||| || || | Sbjct 5337972 TACCGATCGCTCTGTGCCTAAAGTTAGATGTCTTGGCCTCTTCAACGGAATAGTAGTTGA 5338031 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 ||||||||||||| | || | | || |||||| ||| ||||||| ||| | Sbjct 5338032 GGTCTATAATTTTATCTAAATTCTTTATGATAACTTTGGCCATTTCCTTCAATTTATTGA 5338091 Query 53670 AAT----CAA---ATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTA 53722 ||| ||| |||||| || |||||||| || | || || ||||| | ||| Sbjct 5338092 AATTATACAATTTTTTGTCC-GCTGCAACAAACATATTAACGGCGATGGATGCTAAATTG 5338150 Query 53723 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 53782 || || || || |||| | | ||||||| |||||||| || | || || | | Sbjct 5338151 CACACTGCCACTTCATCCGGTGAGGAGTATTGTACGATCTCAGTACACAAGTTGCTGCTC 5338210 Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 53842 |||||||| || | ||| || ||||| |||| || || ||||| ||||| ||| Sbjct 5338211 TTGATGGTGCCCAGATTCTGCTGATTTGACTTTCGATTGCAGTGGTCCTTGTAAAGCATG 5338270 Query 53843 AATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTT 53902 | ||| | |||||||| | ||| || | | ||||| |||| | | || | Sbjct 5338271 TACGGCATTCCAGTTTCCACCTGAGAATTCAGGATCGCCGTCCACAGCTTCCTGGCGTCG 5338330 Query 53903 ATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCT 53962 ||| ||| || | || || ||||| | |||||||| || || |||| | Sbjct 5338331 ATTTGCTTCTTGAATTTGCCGTCACTCTCGTACTTTTCGTACAATCGGTCGAAATCGTTT 5338390 Query 53963 CCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 54022 ||||| |||| | |||||| ||||| | | ||| ||||| | ||||| |||| Sbjct 5338391 CCCCAGACATCATGCAATCCGGGACACTGTTGCGGGCACATGAGGCTCCACTTGCCGTTG 5338450 Query 54023 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || | ||||| || | ||| || ||||||||||| ||||| Sbjct 5338451 TCCAAAACCCTCTTCATGAACAAATCTGGGATCCAAAGAGC-ATAAA 5338496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593681189823600