Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4393 89.7 4e-13 seq26 84.2 2e-11 >seq4393 Length=1805 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | | |||| ||| | ||||||||||| |||||||||||||| | | Sbjct 4 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 63 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| ||||| ||| |||| |||| || ||||| || Sbjct 64 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGA 123 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| || || ||| || || || | | | || ||| | ||| | Sbjct 124 ATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACT 183 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || || ||||| | ||||| ||||| |||||||| Sbjct 184 TCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 >seq26 Length=4002310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| |||||||| ||||| | || || |||| || | ||| ||||| Sbjct 1472169 GTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAACTGCTTGCCA 1472228 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||||||||| ||| | |||||| ||||| ||||| || Sbjct 1472229 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATCTTGGCCTTG 1472288 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| | ||| || | |||||||||||||| ||||| ||| Sbjct 1472289 ACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCAGTTAAAGTT 1472348 Query 21159 TTGACAAATATTTGCATTTTGAATCT 21184 || || || || ||||| |||| || Sbjct 1472349 TTAACGAAGATCTGCATGATGAAGCT 1472374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422231178483620