Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq30 127 2e-24 seq434 123 3e-23 seq4393 116 4e-21 seq26 109 6e-19 seq350 105 7e-18 >seq30 Length=3281913 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || ||||| || || |||||| | || ||||||||| | Sbjct 593909 ATGCAAATTTTCGTGAAAACCCTGACGGGTAAGACTATCACCTTGGAGGTCGAAGCCTCG 593850 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 593849 GACACAATTGAGAACG-TGAAGGCCAAGATACAGGACAAGGAGGGCATACCTCCGGACCA 593791 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | | || | ||| ||||||||||| || || | ||||| || ||||||||| Sbjct 593790 GCAAAGGTTGATTTTCGCCGGCAAACAGCTCGAAGATGGCCGCACTCTTTCCGACTACAA 593731 Query 40869 CATCCAGAA 40877 ||||||||| Sbjct 593730 CATCCAGAA 593722 >seq434 Length=1254451 Score = 123 bits (136), Expect = 3e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| || || || |||||| | || || ||||| Sbjct 844316 AAACATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGC 844257 Query 40746 CACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | || ||| | |||| | |||||| | ||||||||||| ||||| | | Sbjct 844256 TTCTGACACGATTGAAAATG-TCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAG 844198 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | |||||||| | || | ||| ||||| ||||| || || | || || || ||||| Sbjct 844197 ATCAGCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACT 844138 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | ||||| ||||||||| |||| || ||| | || ||||| Sbjct 844137 ATAACATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCG 844098 >seq4393 Length=1805 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || |||||||| || ||| | || ||||| ||| | Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||||| |||||| ||||||| |||||||| ||||| || | || || Sbjct 398 GATACGATTGAAAACG-TCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCA 340 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | || ||||| || || || || | || || | |||||||| Sbjct 339 GCAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAA 280 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| ||| | || || ||| |||| ||||| Sbjct 279 CATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCG 244 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| || || |||||||||||||| | || || || ||| | Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||| | |||||| | ||||||||||| ||||| | || ||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || ||||| || || || || | || || | ||||||||| Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || ||| | || || ||||| || || || Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACG 700 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| |||||||||||||| | || || || ||| | Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| |||||| ||||||| || ||||| || || || | || || Sbjct 1310 GATACAATTGAAAACG-TCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCA 1252 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || || || ||||| || |||| |||||| || |||||||| Sbjct 1251 ACAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAA 1192 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || |||||| |||| || ||| | || ||||| Sbjct 1191 CATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCG 1156 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||| || || | || ||||||||| | Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | |||| | |||||| | ||||||||||| ||||| | || || Sbjct 1538 GACACGATTGAAAATG-TCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCA 1480 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || |||||||| || || | ||| || || ||||| || Sbjct 1479 GCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAA 1420 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || || || | || || ||||| ||| Sbjct 1419 TATTCAAAAAGAATCTACACTCCATCTTGTG 1389 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || ||||||||||| | || || ||||| || Sbjct 686 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAAACCATCACACTTGAGGTTGAAGCTTCC 627 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| ||||||| |||||||| || ||||| | || ||| Sbjct 626 GATACAATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 567 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| || || ||||| || || | ||| || || || || ||| Sbjct 566 CAGCGTTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACTCTGTCTGATTATAAC 507 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || |||||||| || Sbjct 506 ATTCAGAAGGAGTCTACTCTGCATCTTGT 478 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAA 40769 ||||| || || || |||||| | || || ||||| |||| | | | ||||| |||| Sbjct 1805 CTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCCGATACAATTGAAAACG-TCAA 1747 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || ||||||| |||||||| || ||||| | || ||||| || | || | ||| || Sbjct 1746 GGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCTGG 1687 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || || | || || || |||||||||||| || |||||| | || || Sbjct 1686 CAAGCAGCTTGAAGATGGCCGTACACTGTCCGACTACAACATTCAAAAGGAGTCTACCCT 1627 Query 40890 GCATCTAGTGTTGCG 40904 ||| | || ||||| Sbjct 1626 TCATTTGGTCTTGCG 1612 >seq26 Length=4002310 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || ||||| ||||| || | || ||||| || | Sbjct 1472365 ATGCAGATCTTCGTTAAAACTTTAACTGGCAAGACCATTACTTTAGAGGTCGAGGCATCT 1472306 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| |||||||| ||||||||| | |||||| Sbjct 1472305 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATCCCCCCAGACCAG 1472246 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| ||| | || |||| | || || ||||||||| Sbjct 1472245 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAAGACGGAAGGACACTTTCTGACTACAAC 1472186 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || |||||||| |||| || || Sbjct 1472185 ATTCAGAAGGAATCCACCCTTCA 1472163 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || || || || |||||| | || ||||| || | Sbjct 1458408 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTAGAGGTCGAGGCATC 1458349 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| |||| | ||||| | || |||||||| ||||| |||||| Sbjct 1458348 CGACACTATTGAGAACG-TCAAAGCTAAAATCCAGGATAAAGAGGGTATCCCTCCGGACC 1458290 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | || | ||| || |||||||| || |||| | || || ||||||| Sbjct 1458289 AGCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAGGACGGCAGAACTCTTTCTGACTACA 1458230 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| |||||||| | || || ||||| || |||| Sbjct 1458229 ACATTCAGAAGGAATCTACTCTTCATCTGGTTCTGCG 1458193 >seq350 Length=778331 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||||||||| |||||||| ||||| |||||| | || || || || Sbjct 635058 AAGATGCAGATTTTCGTAAAAACCCTCACGGGTAAAACGATCACCCTTGAGGTTGAGGCT 635117 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| |||| | || || | |||||||| ||||| || | ||| Sbjct 635118 TCTGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCCGAC 635177 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | | |||| ||| ||||||||||| || || | ||||| || ||| ||| Sbjct 635178 CAGCAGAGGTTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTAC 635237 Query 40867 AACATCCAGAA 40877 || ||||| || Sbjct 635238 AATATCCAAAA 635248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184132893200