Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq434 136 6e-27 seq4393 132 7e-26 seq363 127 3e-24 seq26 114 2e-20 seq51 102 1e-16 >seq434 Length=1254451 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || || || ||||| | ||||| Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || ||||||||||| ||||||||||| || || || ||| Sbjct 844024 GATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCAA 843965 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || || || | || ||| |||| ||| | ||| || ||| Sbjct 843964 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAAT 843905 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||||||| || || | ||||| |||||||| | ||||||||| Sbjct 843904 ATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGGT 843857 >seq4393 Length=1805 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || |||||||| || || | || |||| || | Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || ||||||||||||||||||||||| || ||||||||| Sbjct 1310 GATACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 1251 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| ||||| || | || || | || ||| || || || || Sbjct 1250 CAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAAC 1191 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || || || | |||||||| || ||| | ||||| || || ||| || Sbjct 1190 ATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGGCATGCAAATTT 1133 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| |||||||| ||||| |||| | || || Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||||||||| |||||||| ||||| || ||||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || || ||| | || ||| | || ||||| || || || Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 279 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||| |||||| | ||||| ||||| ||| | ||||| || || ||| || Sbjct 278 ATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGGCATGCAAATTT 221 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || || || |||||||| || || | || |||| || | Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| || || ||||| ||||| || || ||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || || ||| | || ||| | || ||||| || || || Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || | ||| | || |||||| | ||||| || || Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGGCAT 685 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || ||||| || || | ||| ||||||| Sbjct 686 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAAACCATCACACTTGAGGTTGAAGCTTCC 627 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || ||||||||||| ||||||||||| ||||| ||||| Sbjct 626 GATACAATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 567 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || || || | |||||| | || || | |||||||| Sbjct 566 CAGCGTTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACTCTGTCTGATTATAAC 507 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||| ||||| | || | || | || |||||||| Sbjct 506 ATTCAGAAGGAGTCTACTCTGCATCTTGTACTCCGACTTCGTGGTGGTAT 457 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || || || || |||||||| || |||| | || || | Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || ||||| || ||||||||||| || || || || ||| Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || || || | || ||| | || ||| | || ||||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAAC 51 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | |||||||| || ||| | ||||| || || Sbjct 50 ATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGGCAT 1 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||||||| ||||| || || |||| | ||||| Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||| ||||| ||||| || || ||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || ||||| | || ||| | || ||| | ||| |||||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAT 1419 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | ||| | || | || | || ||||| || Sbjct 1418 ATTCAAAAAGAATCTACACTCCATCTTGTGCTTCGACTTCGTGGTGGCAT 1369 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || ||| |||| | || || Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||| |||||||||||||| || || ||||| Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || ||||| | || ||| | || ||| | ||| ||||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAC 963 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || | ||| | || | || | || |||||||| Sbjct 962 ATTCAAAAAGAGTCTACACTCCATCTTGTACTCCGACTTCGTGGTGGTAT 913 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 124560 CTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAA 124619 || || || || || || || ||||| | ||||| ||||||||| || | || Sbjct 1805 CTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCCGATACAATTGAAAACGTCAAG 1746 Query 124620 CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGA 124679 ||||||||||| ||||||||||| || || ||||| || | | ||||| || || Sbjct 1745 GCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCTGGC 1686 Query 124680 AAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTG 124739 || || | || ||| | || ||| | || || || |||||||| || || || | Sbjct 1685 AAGCAGCTTGAAGATGGCCGTACACTGTCCGACTACAACATTCAAAAGGAGTCTACCCTT 1626 Query 124740 CATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || ||| | ||||| || || ||| || Sbjct 1625 CATTTGGTCTTGCGTCTCCGAGGAGGCATGCAAATTT 1589 >seq363 Length=475187 Score = 127 bits (140), Expect = 3e-24 Identities = 146/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 202863 TACAT-CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNN 202921 ||||| || ||||||||||| ||||| |||||||| || ||||| ||||||| || Sbjct 306116 TACATACCCACATATCCATTGGGATCCCGTCCATCCATGCTGTATTTGTCATTTAGATAG 306175 Query 202922 NNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAA 202981 | || || || |||||||| ||||||||||| ||||||||||||||| Sbjct 306176 ATGGAGTACTTCAGGGCATCCTCCGGTGATTTGGTCCATTCTAAAATTTTTTTAGCCCAA 306235 Query 202982 TACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTC 203041 |||||||||| | ||||| ||||| || | ||| || || ||| || |||||| Sbjct 306236 TACATTCTTAGGAAACCATGAATTTTTCCTTCTTTAACCAACTGAATTTCTGCAGCATTC 306295 Query 203042 CATAAATTGTCATGAGTTAA 203061 || |||| |||||||| || Sbjct 306296 CACAAATCATCATGAGTCAA 306315 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 202739 TATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATAT 202798 ||||| |||| |||| | ||||| || || | || ||||||||| |||| || Sbjct 305885 TATTTCTTAACAAATGCAGGTACATCGAACTTTTTCTTGCAACCTTCATAATTCATGTAG 305944 Query 202799 CTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGAC 202858 | |||||| ||||| | | ||| ||| |||| || ||||||||||||||||| ||| Sbjct 305945 CGAATTTTGCCAAAAACGGATCTCTCTCTCCACCCTTGGTCATGAATACCACAAATGGAC 306004 Query 202859 CACATACATCC 202869 ||||||||||| Sbjct 306005 CACATACATCC 306015 >seq26 Length=4002310 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 124566 GGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAA 124625 || || || || || ||||| |||||||| ||||||||| || ||||| ||| Sbjct 1471499 GGAAAGACAATTACCTTAGAGGTTGAAGCATCAGATACAATTGAAAACGTAAAAGCAAAA 1471440 Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 |||||||| ||||| || || || || || || ||| | || ||||| |||||||| ||| Sbjct 1471439 ATTCAAGACAAAGAGGGCATTCCTCCAGACCAGCAACGTCTCATTTTCGCAGGAAAGCAA 1471380 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 | || || | |||| | ||||||||||||||| ||||||||||| | || || Sbjct 1471379 CTGGAAGACGGAAGAACCCTTTCAGATTATAATATTCAGAAAGAATCAACACTCCACCTG 1471320 Query 124746 GTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| | ||| | || || || || ||| || Sbjct 1471319 GTTCTCCGTCTTCGTGGAGGAATGCAAATTT 1471289 >seq51 Length=2226466 Score = 102 bits (112), Expect = 1e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 205708 GTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAA 205767 || |||| || | ||| || | ||| || || |||||||| ||||| ||||| ||||| Sbjct 126883 GTGTAATCCGTGTGCATGTCCACATACTTGGCGCCAAAATGTCGCCACTGAAAGCCATAT 126824 Query 205768 ACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaat 205827 || ||||||||||| ||||||| ||| | | | | ||| | || | | | || | Sbjct 126823 ACAGGACCTAAATCTCCTTCTTCTCTGTTAGTTAGGCCAAGATTGTCCAAAAATGCACGT 126764 Query 205828 gatccattttcatcccaaatatggattcctttattttttaGAATATTT-GTATTAGTTGA 205886 || ||||| |||||||||| | || ||||| | | || | | ||| | ||| ||||| Sbjct 126763 GAACCATTGGCATCCCAAATGTTGACGCCTTTCTCTGATA-ACTCTTTGGCATTTGTTGA 126705 Query 205887 TCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGT 205946 || |||||||| | | || ||||| | ||||||||| || | ||||||||| Sbjct 126704 GCCTCTAATAAACCAGAGCAGCTCCTCAACTACTCCTCTCCAGAAGACGCGTTTTGTTGT 126645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755404581776000