Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4393 138 1e-27 seq350 127 2e-24 seq434 105 6e-18 seq26 105 6e-18 seq30 104 2e-17 >seq4393 Length=1805 Score = 138 bits (152), Expect = 1e-27 Identities = 161/214 (75%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTG--CGCGTATCCTC 118588 |||| |||| ||||||||||||||||||||| || | || | |||| ||| ||| || Sbjct 935 CAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGT--CTGAAAGTGTACGCCCATCTTC 992 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||||||| |||||| | || | |||||||||||||||||| || || || || || Sbjct 993 GAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTG 1052 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | || | ||||| | | |||||| || | || | ||||| Sbjct 1053 AATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTT 1112 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || |||||||| |||||||| |||||| || Sbjct 1113 ACCAGTAAGAGTTTTAACAAAAATTTGCATGCCT 1146 Score = 134 bits (148), Expect = 1e-26 Identities = 160/214 (75%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTG--CGCGTATCCTC 118588 |||| |||| |||||| ||||||||||| || || | || | |||| ||| ||| || Sbjct 1391 CAAGATGGAGTGTAGATTCTTTTTGAATATTATAGT--CTGAAAGTGTACGCCCATCTTC 1448 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||||||| |||||| | || | |||||||||||| ||||| || ||||| |||||| Sbjct 1449 GAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTG 1508 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||||| | | ||||| || | || | ||||| Sbjct 1509 GATTTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTT 1568 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || ||||| |||||||| |||||| || Sbjct 1569 TCCTGTTAGGGTTTTAACAAAAATTTGCATGCCT 1602 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | ||| || || |||| || |||||||| ||||||||||| || | Sbjct 232 CCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGAC 291 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| ||||| || || ||||| | || | ||| |||||||| |||||| Sbjct 292 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGT 351 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || |||||| |||||| || || | ||| | || || | | |||||| Sbjct 352 ATGCCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACT 411 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | |||||||| || |||||||| || || |||||||| Sbjct 412 TCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||||||||||||||| || || || || ||| ||||| || || ||| Sbjct 718 GTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCGAGTTGCTTGCCA 777 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| |||||||| ||||| || ||||| ||||| |||||| ||| Sbjct 778 GCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCCTGGATTTTTGCTTTG 837 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | | ||| || || | || | |||||||| || |||||| Sbjct 838 ACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGTTTTGCCAGTAAGAGTT 897 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| || ||||| Sbjct 898 TTTACAAAGATTTGCAT 914 Score = 118 bits (130), Expect = 9e-22 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || |||||||| ||||| || ||| ||| |||||||||||| || ||| Sbjct 490 GTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCA 549 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | |||||||||||| || || || || || |||||| |||||| || Sbjct 550 GCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTGGCCTTC 609 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | || || | ||| || ||||| | || | ||||| || || ||||| Sbjct 610 ACATTTTCAATTGTATCGGAAGCT-TCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGT 668 Query 118721 TTTTACAAAAATCTGCATGGCT 118742 || ||||| ||||||||| || Sbjct 669 CTTGACAAAGATCTGCATGCCT 690 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | ||| ||||| || | || ||||| || |||||||| || ||| | Sbjct 4 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 63 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| |||||||| || ||||| | || || || || || || ||||| Sbjct 64 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGA 123 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || || ||||| || || | ||| | ||||| | |||||| Sbjct 124 ATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACT 183 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | ||||| ||||| ||||||||||||||||| |||||| || Sbjct 184 TCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATGCCT 234 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | ||| ||||| || | |||||||| |||||||||||||| ||| | Sbjct 1600 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAC 1659 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| || ||||| || |||||| | || | |||||||||||| ||||| Sbjct 1660 AGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGG 1719 Query 118632 ATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||||| |||||| Sbjct 1720 ATACCTTCTTTGTCTTGAATTTT 1742 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | ||| ||||| || | || ||||| |||||||||||||| || Sbjct 1144 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAT 1203 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| || || ||||| ||||| || | || | | ||| ||||| ||||| Sbjct 1204 AGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGA 1263 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || ||| |||||| || || | ||| | || || | | ||| || Sbjct 1264 ATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACT 1323 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | |||||||| || ||||| || ||||| ||||||||| Sbjct 1324 TCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 >seq350 Length=778331 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| || ||||||||| | |||||| ||||||||||||||| |||||| ||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | | |||||| ||||| || ||||| || ||||| || || ||| || | || Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| || | ||| ||||| | ||| | |||||| || || || |||||||| | Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 118729 AAATCTGCAT 118738 |||||||||| Sbjct 635070 AAATCTGCAT 635061 >seq434 Length=1254451 Score = 105 bits (116), Expect = 6e-18 Identities = 167/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | || || || || || | ||| |||||||||||||| ||||| | || Sbjct 843857 ACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGT--CT 843914 Query 118571 CATAGTGCGCG--TATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | |||| ||| ||| |||||||| || ||||| | || || || || || || ||| Sbjct 843915 GAAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGA 843974 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTC 118687 || || || || |||||| |||||| || || | ||| | || || | ||| || Sbjct 843975 GGGATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCT-TC 844033 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| | ||| | ||| || || || ||||| || ||||| ||||||||| || Sbjct 844034 CACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATGCCT 844088 >seq26 Length=4002310 Score = 105 bits (116), Expect = 6e-18 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||| || ||||| || || ||||| || || || | ||| |||| Sbjct 1457972 CAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGTTCTACCATCTTCGA 1458031 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||||||||| |||||||||||||||| || || || || || ||||| ||| | Sbjct 1458032 GTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGA 1458091 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| || || | |||| ||| || | ||| |||||||| | ||| | ||||| Sbjct 1458092 TTTTAGCCTTGACATTCTCGATGGTATCTGAAGCT-TCGACCTCCAAGGTAATGGTTTTA 1458150 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| |||||||| ||||| Sbjct 1458151 CCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || ||||||||||| || | ||| | |||||||||||||| ||| Sbjct 1458211 GTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCA 1458270 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||||||||| || ||||| || ||||| || || ||||| ||| Sbjct 1458271 GCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCCTCTTTATCCTGGATTTTAGCTTTG 1458330 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | ||| ||||||||| | ||| | || || || |||| || Sbjct 1458331 ACGTTCTCAATAGTGTCGGATGC-CTCGACCTCTAGGGTGATAGTCTTTCCAGTCAAGGT 1458389 Query 118721 TTTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 1458390 CTTGACAAAAATCTGCAT 1458407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| ||||| ||| || || || |||||||||||||| Sbjct 1458409 CCTCCACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAA 1458468 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||| || | ||| || ||||| |||||||||||||||| || ||||| Sbjct 1458469 AGCGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 1458528 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTC 118669 |||||||| |||||| ||||||| ||| || | ||| Sbjct 1458529 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTACGTTTTC 1458566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 118533 AAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGA 118590 ||||| | || || || || ||||||||||| || | |||| | | || || | Sbjct 1472160 AAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAG--AAAGTGTCCTTCCGTCTTCTA 1472217 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || ||||| |||||||||||||||| || || || ||||| || |||||| || Sbjct 1472218 ACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAA 1472277 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || || || | || | ||| || | ||| ||||||||| | || | || ||| Sbjct 1472278 TCTTGGCCTTGACATTCTCAATGGTATCAGATGC-CTCGACCTCTAAAGTAATGGTCTTG 1472336 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || | |||||| || || ||||||||| Sbjct 1472337 CCAGTTAAAGTTTTAACGAAGATCTGCATG 1472366 >seq30 Length=3281913 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||| ||| | |||||| ||| ||||||||||| || ||| | | Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGT 118667 | | | ||||| || ||||||||||||||||||| |||| || || || || | Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGT-ATCTTGGCCTTCACGTTC 593838 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | ||||||| | |||||||| | ||| | || || || ||||| ||||| || Sbjct 593839 TCAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACG 593898 Query 118728 AAAATCTGCAT 118738 ||||| ||||| Sbjct 593899 AAAATTTGCAT 593909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801610607940