Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq3748 116 4e-21 seq214 102 9e-17 seq142 102 9e-17 seq30 100 3e-16 seq4393 98.7 1e-15 seq64 95.1 1e-14 seq2678 93.3 5e-14 seq434 93.3 5e-14 seq4182 91.5 2e-13 seq622 91.5 2e-13 seq2800 89.7 6e-13 seq26 89.7 6e-13 >seq3 Length=8148774 Score = 131 bits (144), Expect = 2e-25 Identities = 235/336 (70%), Gaps = 12/336 (4%) Strand=Plus/Minus Query 14612 ACCCGAAAACCTTTTTGTGGAGGCCTTGTTCTGACGGATAGCGA--CAGATTTGATGCCG 14669 || |||||||| ||| || || ||||| |||| || | ||| || |||||| Sbjct 2337707 ACACGAAAACCGTTTCACGGCGGTCTTGTACTGATAGACA-CGAATCA-ATTTGACAAGT 2337650 Query 14670 ACAACGATTACATAATATCGGCCACGTATTTTGAAGGGAAAAAAG-TGCATTACAACATT 14728 ||||||| ||||| |||| || ||||| ||| || ||||||| | || | ||| ||| Sbjct 2337649 ACAACGACTACATTTTATCAGCAACGTACTTT-AATTCAAAAAAGATCCACTTCAATATT 2337591 Query 14729 GGCTTATTTTACTATGTATTGTGGAGTATATGCAGTGGCAAGGAGTGGATGGATAAAAAT 14788 || | |||||||| || | |||| | ||| |||| ||||||||||||| |||| Sbjct 2337590 GGGCTGTTTTACTACGTGCTTTGGAAAAACTGCCAAAGCAAAGAGTGGATGGATATAAAT 2337531 Query 14789 GTGGCTGCCCAATTCCTGAAGTACGTCAAACGTCGCATC---GAAATTACAACATGCAAG 14845 || || | || ||| |||||||| || | |||||| ||| ||| ||||| Sbjct 2337530 GTTGCCGAACAGTTCAAGAAGTACGCCATGAGACGCATCAGTGAA---ACAGTTTGCAAA 2337474 Query 14846 CTTGGACTCTCGTCTCTTCCCCTGGACCCACAAATGAATACGTCACTGCTGACCGCATTA 14905 |||| ||||| ||| | || || ||||| ||| || || || ||||| ||||| || Sbjct 2337473 ATTGGCCTCTCATCTTTGCCACTAGACCCCCAAGAAAAGACCTCGCTGCTTACCGCGTTG 2337414 Query 14906 TGGTACTGTGTCGACCTCTCATCCGACATATTTAAA 14941 |||||||| || ||| | || || ||| || ||| Sbjct 2337413 TGGTACTGCGTTGACTTGTCTTCGTGCATTTTCAAA 2337378 >seq3748 Length=1445 Score = 116 bits (128), Expect = 4e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1399 ATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 1340 Query 60121 CACTATACTACCGAGGA 60137 ||||||||||||||||| Sbjct 1339 CACTATACTACCGAGGA 1323 >seq214 Length=923020 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 548684 CTCCGCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 548625 Query 60126 TACTACCGAGGATT 60139 |||||||| ||||| Sbjct 548624 TACTACCGCGGATT 548611 >seq142 Length=890596 Score = 102 bits (112), Expect = 9e-17 Identities = 77/90 (86%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 60057 AAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| |||||| |||| ||||||||||||| |||| || || |||||||||| || Sbjct 609144 AAAAATTGATTCTCCCCGGCTGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGAT 609085 Query 60115 ACTCACCACTATACTACCGAGGATTGAATA 60144 ||| |||||||||||||||||||||| || Sbjct 609084 ACTATCCACTATACTACCGAGGATTGATTA 609055 >seq30 Length=3281913 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| || ||||||||||||| ||||| ||||||| Sbjct 216069 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCACGTGACAGGCGGAGATACTGACCACTA 216128 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 216129 TACTACCGAGGAT 216141 >seq4393 Length=1805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| || ||||||| |||||| ||| | || || ||||||||||||||||| Sbjct 495 CTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAA 554 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||| || | || | | || |||| | ||| |||| | || | Sbjct 555 AATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGT-CTTGAATTTTGGCCTTCACAT 613 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||| || || | ||||||||||| || || || ||||| | Sbjct 614 TTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGA 673 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 674 CAAAGATCTGCAT 686 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||||||||| || || | || || ||| | || || ||||| ||||||||||| Sbjct 1408 TCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAA 1467 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| || | || | | ||| ||||| ||||||| ||||| | Sbjct 1468 ATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTT 1527 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| | ||| || || | ||| || ||||| || ||||| || || ||| Sbjct 1528 TCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACA 1587 Query 43173 AAGATTTGCAT 43183 || |||||||| Sbjct 1588 AAAATTTGCAT 1598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||| || || | ||| | || ||| |||||||| ||||| || | | Sbjct 688 CCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGAC 747 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || || ||||| ||||| || || | || ||||| || | || Sbjct 748 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGG 807 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| |||||| ||||||| ||||| | | | ||||| | || || Sbjct 808 ATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACT 867 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || || ||||||||||||||||| Sbjct 868 TCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| |||||||| || || || | || || ||| | || || ||||| ||||||||||| Sbjct 951 CTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAA 1010 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||| |||| || | | || || ||| ||| |||| | ||||| Sbjct 1011 AATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCC-TGAATTTTAGCTTTGACAT 1069 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||||| | || || || | ||||| ||||| || || || || || | Sbjct 1070 TCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAA 1129 Query 43171 CAAAGATTTGCAT 43183 |||| |||||||| Sbjct 1130 CAAAAATTTGCAT 1142 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||||| |||||||| | || |||||||||||| ||||| || | | Sbjct 1600 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAC 1659 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || || | || || |||||||| |||||||| || | |||||||| || Sbjct 1660 AGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATC 1712 >seq64 Length=1863977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| |||| || || |||||||||| |||| Sbjct 1060102 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGATAC 1060043 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT 60147 | |||||||||||||||||||| |||||| Sbjct 1060042 TAACCACTATACTACCGAGGAT---ATATAT 1060015 >seq2678 Length=18144 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||| || || |||||||||| ||||| |||||| Sbjct 16538 TCTCCCCGGCGGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGATACTAACCACT 16597 Query 60125 ATACTACCGAGGAT 60138 |||||||||||||| Sbjct 16598 ATACTACCGAGGAT 16611 >seq434 Length=1254451 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||| || |||| | || || || ||||| | |||| ||| |||||||||||||| | Sbjct 843853 ATTGACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGT 843912 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | | || || || | || || |||||||| ||||| || || ||||| || ||||| | Sbjct 843913 CTGAAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTG 843972 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 || | | || |||| | ||| |||| | |||| | | | || ||| | | Sbjct 843973 GAGGGATACCTTCTTTGT-CTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCT 844031 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | ||||| || || || || || ||||| |||||||| ||||| Sbjct 844032 TCCACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq4182 Length=1742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| || || |||||||||| ||||| ||||||| Sbjct 50 CTCCCCGGCGGGGAATCGAACCCCGGTCCTCCACGCGACAGGCGGAGATACTAACCACTA 109 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 110 TACTACCGAGGAT 122 >seq622 Length=405864 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| | || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 258176 AAAAAGAATCTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 258117 Query 60117 TCACCACTATACTACCGAGGATT 60139 | ||||||||||||| || |||| Sbjct 258116 TGACCACTATACTACTGAAGATT 258094 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| | || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 258337 AAAAAGAATCTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 258278 Query 60117 TCACCACTATACTACCGAGGATT 60139 | ||||||||||||| || |||| Sbjct 258277 TGACCACTATACTACTGAAGATT 258255 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| | || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 258475 AAAAAGAATCTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 258416 Query 60117 TCACCACTATACTACCGAGGATT 60139 | ||||||||||||| || |||| Sbjct 258415 TGACCACTATACTACTGAAGATT 258393 >seq2800 Length=9741 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||| | || ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8081 TCTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 8022 Query 60125 ATACTACCGAGGAT 60138 ||||||| || ||| Sbjct 8021 ATACTACTGAAGAT 8008 >seq26 Length=4002310 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| |||| ||||| | |||| || ||||| ||||||||||| Sbjct 1458217 TCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAA 1458276 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||| | || | | ||| || ||| |||||| ||||| || Sbjct 1458277 ATCAAACGCTGCTGGTCCGGAGGGATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTC 1458336 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| | || || || | ||||| || || || || | ||||| ||| Sbjct 1458337 TCAATAGTGTCGGATGCCTCGACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACA 1458396 Query 43173 AAGATTTGCATT 43184 || || |||||| Sbjct 1458397 AAAATCTGCATT 1458408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||||| |||| || | ||| ||||| ||||| |||||||||| Sbjct 1458408 TCCTCCACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGA 1458467 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | || |||| |||||| ||||| || ||||| ||||||||||| | || Sbjct 1458468 AAGCGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGG 1458527 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 | || ||| |||| | ||| |||||| || Sbjct 1458528 AATGCCCTCTTTGT-CTTGAATTTTTGCTT 1458556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571778680664600