Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq26 98.7 6e-16 seq434 95.1 8e-15 seq30 93.3 3e-14 seq4393 86.0 4e-12 >seq26 Length=4002310 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGT-CGTCGTCCAACTGCTTGCCTGCGA 34256 ||| ||||| ||||||||||| || || || | | |||| || ||||||||||| || | Sbjct 1472174 TTCCTTCTGAATGTTGTAGTCAGAAAG-TGTCCTTCCGTCTTCTAACTGCTTGCCAGCAA 1472232 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 | ||||| ||||||||||| ||| | || || ||||| ||||| ||| | || Sbjct 1472233 AGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATCTTGGCCTTGACAT 1472292 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | ||||| || | || ||||| ||||| || | |||||| | Sbjct 1472293 TCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCAGTTAAAGTTTTAA 1472352 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 1472353 CGAAGATCTGCAT 1472365 >seq434 Length=1254451 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||||||||| |||| | || || | ||||||||| |||||| Sbjct 844122 TCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAA 844181 Query 34259 ATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 || | || ||||| || || || || |||| ||||| || ||||||||| | | Sbjct 844182 ATCAAACGTTGCTGATCTGGAGGGATACCCTCT--TTGTCTTGGAT-TTTTGCTTTGACA 844238 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | |||| || | | ||| || || | ||||| || || || ||||| || || Sbjct 844239 TTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTG 844298 Query 34376 ACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 844299 ACAAAGATCTGCAT 844312 >seq30 Length=3281913 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| |||||||||||||| || ||| | || || | ||| ||||| ||||||| Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 | | || |||||||| || | || ||||||||| |||||| ||| | | Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCT 593839 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | || | || | | |||||| |||| ||||| || || || || || |||||||| | Sbjct 593840 CAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGA 593899 Query 34380 AGATCTGCATC 34390 | || |||||| Sbjct 593900 AAATTTGCATC 593910 >seq4393 Length=1805 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || | |||| || ||||| ||||| || || ||||| ||| | || Sbjct 475 AGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCC 534 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | |||||||| || || | | || ||||| Sbjct 535 TCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCT 594 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | || | || | ||||| | ||| || || | ||||||||| Sbjct 595 TGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTT 654 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||||||| || |||||||||||||| Sbjct 655 TTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 686 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 || || |||| ||| ||||| || ||||||||||| |||| ||| | || || Sbjct 706 ACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCG 765 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGG 34298 | |||||||| || ||||| | || ||||| || || || || |||| ||||| Sbjct 766 AGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCT--TTGTCCT 823 Query 34299 CTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||||||||| | || | || | || | | || || |||| ||||||||| Sbjct 824 GGAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGTT 882 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || |||||||| |||||||| ||||| Sbjct 883 TTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323050560639200