Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq434 116 3e-21 seq30 105 5e-18 seq4393 100 2e-16 seq26 87.8 1e-12 >seq434 Length=1254451 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || ||| ||||||||||||||| |||||| |||| || | || Sbjct 844101 AAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCT 844160 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| ||||| || || || || ||||| | |||||| ||||| Sbjct 844161 TCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCT 844220 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| || || | | |||| | | |||||||| | ||| |||||| Sbjct 844221 TGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGTC 844280 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCTCAATAC 45349 || || || || ||||| |||||||| |||||| |||||| || || Sbjct 844281 TTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGCCTGAAAAC 844326 >seq30 Length=3281913 Score = 105 bits (116), Expect = 5e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| |||||||||||| || ||| | || || || ||||| |||||||| ||| Sbjct 593722 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAATC 593781 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 |||| || ||||| ||||| | |||||||||||| || || ||| || | | Sbjct 593782 AACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCTCA 593841 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | ||||| | || ||||||| ||| || ||||| |||||||| || ||||| || Sbjct 593842 ATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGAAA 593901 Query 45329 ATTTGCAT 45336 |||||||| Sbjct 593902 ATTTGCAT 593909 >seq4393 Length=1805 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || ||| |||||| |||||||||||||| ||| ||| |||| Sbjct 1159 AAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCT 1218 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || ||||| | |||||| || ||||| | ||| || || || Sbjct 1219 TCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCT 1278 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | | || |||| || |||| || || || Sbjct 1279 TGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGTT 1338 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||| |||||||| |||||| Sbjct 1339 TTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || ||| ||||||||||||||| |||||| |||| || | || Sbjct 19 AAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCT 78 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || || |||| || |||||||| ||||| | || || || ||| Sbjct 79 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATCC 138 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | |||| | |||| || || | |||||| || Sbjct 139 TGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGTT 198 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || ||||| ||||||||| Sbjct 199 TTACCGGTAAGAGTTTTTACAAAAATTTGCATG 231 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 |||||| | || || || ||| || |||||||||||||| || | || | || Sbjct 702 TAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATC 761 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||| || || || || ||||| || || || || ||||| | |||||| ||||| Sbjct 762 TTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTC 821 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | |||||| || || | | |||| |||| || |||| || || || Sbjct 822 CTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGT 881 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| || |||||||||||||| Sbjct 882 TTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 >seq26 Length=4002310 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| || | |||| || || ||||| || ||||| Sbjct 1458217 TCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAA 1458276 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| ||||| ||||| | |||||| || ||| ||||| || || | Sbjct 1458277 ATCAAACGCTGCTGGTCCGGAGGGATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTC 1458336 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| |||| ||||| | ||| || ||||| || |||| ||||| ||| Sbjct 1458337 TCAATAGTGTCGGATGCCTCGACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACA 1458396 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 1458397 AAAATCTGCAT 1458407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395048982439345