Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq4393 113 4e-20 seq434 95.1 1e-14 >seq4393 Length=1805 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || |||||||| |||| |||||||| |||||| | || ||||| | Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| || |||| |||||| | ||||||||| |||| || ||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||| ||||| |||||| || || || |||| | Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 279 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| | || || |||||||| || || | || ||||| Sbjct 278 ATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGG 232 >seq434 Length=1254451 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || || | || || || ||||| ||| | || || ||| | Sbjct 844085 CATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTC 844026 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | |||| || |||| |||||| | |||||||| | || ||||| Sbjct 844025 CGATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCA 843966 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTAC 25008 ||||| | || | ||| ||||| || || |||||| || ||| | | || ||| Sbjct 843965 ACAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCA--GACTAC 843908 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAAT 25063 | || || |||||| |||| ||||||||||| |||||| | || || ||||||| Sbjct 843907 AATATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGGTCAAT 843853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || || || ||||| ||| | || || ||| | Sbjct 844313 CATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTC 844254 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||| || | |||||| | ||||| || | || || || Sbjct 844253 TGACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCA 844194 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||||| || | || ||||| || || |||||| | || || ||| || | Sbjct 844193 GCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAA 844134 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| |||||||| || || || | || ||||| Sbjct 844133 CATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 844086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418276240954400