Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq51 114 3e-20 seq30 89.7 1e-12 >seq51 Length=2226466 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||||||||| |||||||| || |||| || ||||| || | || || | ||| Sbjct 127174 AATCCAGATGACAGAAGGATAATAATGAGCGCGTGGAACCCAAGTGACATTTCTCAAATG 127233 Query 35582 GCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGC 35641 |||||||| || |||||| || ||| |||||||| || |||||| ||||||| ||| Sbjct 127234 GCTCTTCCACCTTGCCACGCTCTTGTTCAGTTTTATGTAGCAAATGGAAAATTGTCTTGC 127293 Query 35642 CAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 || | || || |||| | ||| | || | || || || ||||| ||||| || ||| Sbjct 127294 CAACTTTACCAAAGAAGTGCTGATATGGGACTTGGTGTACCATTCAACATTGCCTCTTAC 127353 Query 35702 TCTCTTCTGACTCATCTGATGGC 35724 || || ||||| | | |||| || Sbjct 127354 TCGCTGCTGACGCGTATGATTGC 127376 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACT-CTCGTGGTTCATCAGGGGCAATACAGACGCCAA 35307 |||||||||||||| || || || || ||| ||||| || || ||| ||| | ||||| Sbjct 126660 TTCTGGAGAGGAGTAGTTGAGGAGCTGCTC-TGGTTTATTAGAGGCTCAACAAATGCCAA 126718 Query 35308 AGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGA 35367 ||| || | |||| | |||| ||| | || ||||| || || | ||||||||| Sbjct 126719 AGAGTTATCAGAGAAAGGCGTCAACATTTGGGATGCCAATGGTTCACGTGCATTTTTGGA 126778 Query 35368 CAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATG 35427 || | || || | |||| ||| |||||||| || || ||||| || || || || Sbjct 126779 CAATCTTGGCCTAACTAACAGAGAAGAAGGAGATTTAGGTCCTGTATATGGCTTTCAGTG 126838 Query 35428 GCGTCATTTTGGTGCTGAATATG 35450 ||| |||||||| || | |||| Sbjct 126839 GCGACATTTTGGCGCCAAGTATG 126861 >seq30 Length=3281913 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 102119 ATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAA 102178 ||| ||| || ||||| |||||||||||||||| | || | | | ||||| || | Sbjct 991831 ATTATCAAAGATGCCGTTGAAATTGAACAAGAATTTTTAACTGATGCTCTGCCAGTGGAG 991890 Query 102179 TTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACT 102237 | | || |||||||||||| | ||| ||||||||||||||||||| ||||| | ||| Sbjct 991891 ATGATTGGCATGAACTGCAAGCTCATGTGCCAGTACATTGAATTTGTTGCAGACAGACT 991949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989514962599975