Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq203 134 2e-26 seq30 96.9 4e-15 seq2 96.9 4e-15 >seq203 Length=886859 Score = 134 bits (148), Expect = 2e-26 Identities = 218/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 63336 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63395 || ||||| ||||| ||||| ||||| | | | ||| | |||||| || |||||||| Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 63396 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63455 ||||| | | || || | ||||| ||||||||||| | || | || || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 63456 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT 63515 ||||||| | |||||||| | || ||||| |||||||||||||| | || | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 63516 CCACTGGCACGAATATT-ACTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63573 ||| | |||||||| || || | || ||||| || || ||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTG--AGACCAATGCCTCCTGCTGATTTACTAATTA 357223 Query 63574 ATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTA 63633 || |||| |||||| || ||| | || ||||| || || || || |||| | || | Sbjct 357224 CGGCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCA 357283 Query 63634 GAAAACAGCT 63643 |||||| || Sbjct 357284 AAAAACAACT 357293 Score = 107 bits (118), Expect = 2e-18 Identities = 191/276 (69%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || ||||| || || || ||| | ||| ||| | || ||||| || || ||||| Sbjct 357363 CTGGACATCTGTTGGCGTTGAGTACAGGCAGAAAAAAGCGTTGGAGACGCATGTGTAAAG 357422 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 63760 | ||||| | | ||||| || || ||| || ||| | ||| | ||| || || Sbjct 357423 TAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTGTCAAGATCTTCCTTG-TGGAT 357481 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 | || || || ||||||| ||| |||||||| | |||||| | ||| | || ||||| Sbjct 357482 GGCAACAGCAACTCGCATTATCATATGCTGAGGACGTTCAACTACTTTATCATTAATTTT 357541 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || | ||| | | || ||||||||||| |||||||| ||||| |||||||| || Sbjct 357542 TAAAAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATAATTGTAACCAAAGTCTCTATC 357601 Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTTATATTT 63916 ||||| || | ||||| || ||||||| | ||| Sbjct 357602 ATAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 62355 TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTC 62414 || |||| | || | | |||||| || ||||| | |||||||| || || | ||| | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 62415 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62474 | ||| |||||||| ||||| ||||| || ||||||||||| || | |||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 62475 GTTGATGCAGTCGGCATAGGTGC 62497 || ||||| || ||||| || || Sbjct 355892 GTCGATGCTGTTGGCATCGGAGC 355914 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| ||| || ||||| ||||||| |||||||| |||||||||||||| | | Sbjct 357809 CACTGAATACTTTCTTGGTTTCTTTGTGTAAATTTGATACTGCTATTCTGGCGGCCAATA 357868 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| | |||| || || || || || | || |||||||| | || | Sbjct 357869 TAGCATAATCTGCGTGTTTGGTTGTCATCGTAGCAGCAGTCTCTGCTGCCAGGTTATCAA 357928 Query 64126 ATTCTACCGTTGTTACTCCA 64145 ||| || ||||| |||||| Sbjct 357929 GTTCCACTGTTGTGACTCCA 357948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 62160 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62219 || || || || || | ||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 355514 GCCATGTGTATGTTGAGAGATTGAGACTGATCAATAAAAGCTCCTCTGTCCGCAGCCATT 355573 Query 62220 TTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA 62260 |||| || |||||||| | ||||||||||| |||||| || Sbjct 355574 TTTAAAATTGTCTTTTGAGAAATTTCCCAAACAGTTTTGTA 355614 >seq30 Length=3281913 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || || | ||||||||| || |||||||| ||||| || || || ||||| ||||| | | Sbjct 991051 TTTGAAAGATCCACTTCCTCTACTGTCCAGAATGAAGCTTCCGCTTTTTTGTACATCTGC 990992 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA--AGGA 34185 |||||||| | |||| ||||||||||| |||||||| |||| ||| | || || | Sbjct 990991 CAGATGTCTGGCCATTGAATTGGGAAAATGACAAATCTTCTTGGGTTT--TCCATCAGAA 990934 Query 34186 TAGGTTCCA 34194 |||||||| Sbjct 990933 GAGGTTCCA 990925 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 33623 TTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33682 ||||||| || || || || ||||| || || |||||||| |||||||| || | || Sbjct 991651 TTCGTTACTGAAGGTAAGACCCGGCATGAGTCCTCGCTTTTTCAGCCAAAAAATAGCTGC 991592 Query 33683 GAA--TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33740 || || | ||||| |||| ||||| |||||||| || ||||||| | || || Sbjct 991591 AAAACTGCCACTGAAAA--AGATACCTTCGACTGCAGCGAAAGCAATAACACGTTCGGCA 991534 Query 33741 TAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 33797 | ||||| |||| ||||| || ||||||| | ||| || || | ||||| Sbjct 991533 AATGTAGCGCTCTCATTGCTAATCCAGTTGAGAGCCCAGTTGGCTTTTTTAGTAACACAT 991474 Query 33798 GGCATCGTTTCTATGGCATTAAA 33820 |||| || || ||||||||||| Sbjct 991473 GGCAGAGTCTCAATGGCATTAAA 991451 >seq2 Length=6207162 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824 || || || | ||| | ||||||||| || | |||| | | ||||| || ||||||||| Sbjct 5339095 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5339154 Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63884 ||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5339155 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5339214 Query 63885 ATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGA- 63943 | ||| | ||||| |||||||| || | | | | || ||||| ||| ||| | || || Sbjct 5339215 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATAT-CATTGTACT-CTCGAC 5339272 Query 63944 -AATAATCGGAGAATG 63958 |||| ||||| ||| Sbjct 5339273 TTATAACCGGAGTATG 5339288 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824 || || || | ||| | ||||||||| || | |||| | | ||||| || ||||||||| Sbjct 5350394 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5350453 Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63884 ||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5350454 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5350513 Query 63885 ATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGA- 63943 | ||| | ||||| |||||||| || | | | | || ||||| ||| ||| | || || Sbjct 5350514 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATAT-CATTGTACT-CTCGAC 5350571 Query 63944 -AATAATCGGAGAATG 63958 |||| ||||| ||| Sbjct 5350572 TTATAACCGGAGTATG 5350587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629774733039600