Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq203 111 1e-19 seq30 95.1 1e-14 >seq203 Length=886859 Score = 111 bits (122), Expect = 1e-19 Identities = 199/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 || || || |||| ||| || |||||||| || | ||||| | | ||| |||||||| Sbjct 357007 AGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAAATGGCAAATGCCCCTGGTCTC 357066 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 || | ||||||||||| || ||| | |||| || || | | ||||| ||| || ||| Sbjct 357067 TTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTGAAAACTCTTAGCATTGGAACT 357126 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTT 38286 | ||||| || | || || |||| | || | || || | || || || || | Sbjct 357127 AACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTGCCAGTCGCACGAATGTTGTGT 357186 Query 38287 ATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATC 38345 | | || || || ||||| || ||| | |||| || ||| |||||| ||||| Sbjct 357187 ACACTGAGACCAATGCCTCCTGC-TGATTTACTAATTACGGCACATCTTTTTAAAGTATC 357245 Query 38346 AAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 ||| || ||||| |||||||| || | |||| ||| | ||||||||| Sbjct 357246 AAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCAAAAAACAACT 357293 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 |||| ||| |||| || || ||||| |||| ||| || || || || | ||| | |||| Sbjct 355776 TTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGTCTTT 355835 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 || ||||| || ||||||||||||| ||||||||||| | | ||||| | || | Sbjct 355836 GGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCCGTCG 355895 Query 37229 ATGCAGTAGGCATTGGTGC 37247 |||| || ||||| || || Sbjct 355896 ATGCTGTTGGCATCGGAGC 355914 >seq30 Length=3281913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 ||||| |||||||| || ||||| || || ||||| || |||||||| || || |||||| Sbjct 991322 TACATCTCTGAATGGATGTTTTCTATGGCAATTTGGAAACCATAGAAGCAACGAGCCTCT 991263 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | ||||| || | || |||||| ||||||||||||| ||||| ||||| Sbjct 991262 GTAACTTGTACTTCTTGACTGAACCTTTCCACTAAATTCTCATTGACAATGCCATCTGAG 991203 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCT 12085 | || |||||||| | || || || |||| ||| || ||| Sbjct 991202 GCAGCGAAAAATGCCAATACGTGCGAGATGAAGTGTTTCTCATCT 991158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468492911030800