Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq203 131 2e-25 seq2 87.8 2e-12 >seq203 Length=886859 Score = 131 bits (144), Expect = 2e-25 Identities = 217/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || ||||| ||||| ||||| ||||| | | | ||| |||||| || |||||||| Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 ||||| | | || || | ||||| ||||||||||| | || | || || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308 ||||||| | |||||||| | ||||| || |||||||||| || | || | | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 66309 CCACTTGCACGAATATT-ACTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 ||| | |||||||| || || | || ||||| || || ||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTG--AGACCAATGCCTCCTGCTGATTTACTAATTA 357223 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 || |||| |||||| |||||| | || || || ||||| || || |||| | || | Sbjct 357224 CGGCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCA 357283 Query 66427 GAAAACAGCT 66436 |||||| || Sbjct 357284 AAAAACAACT 357293 Score = 104 bits (114), Expect = 3e-17 Identities = 190/276 (69%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || ||||| || || || ||| | ||| ||| | || ||||| || || ||||| Sbjct 357363 CTGGACATCTGTTGGCGTTGAGTACAGGCAGAAAAAAGCGTTGGAGACGCATGTGTAAAG 357422 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 66553 | ||||| | | ||||| || || ||| || ||| | ||| | ||| || || Sbjct 357423 TAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTGTCAAGATCTTCCTTG-TGGAT 357481 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 | || || || ||||||| ||| |||||||| | |||||| | || | || ||||| Sbjct 357482 GGCAACAGCAACTCGCATTATCATATGCTGAGGACGTTCAACTACTTTATCATTAATTTT 357541 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 || | ||| | | || ||||||||||| |||||||| ||||| |||||||| || Sbjct 357542 TAAAAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATAATTGTAACCAAAGTCTCTATC 357601 Query 66674 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 ||||| || | || || ||| ||||||| | ||| Sbjct 357602 ATAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 100 bits (110), Expect = 4e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||||| ||||||||| |||||||| ||||| | | Sbjct 357809 CACTGAATACTTTCTTGGTTTCTTTGTGTAAATTTGATACTGCTATTCTGGCGGCCAATA 357868 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | |||||||| | |||| || || || || || | || |||||||| | || | Sbjct 357869 TAGCATAATCTGCGTGTTTGGTTGTCATCGTAGCAGCAGTCTCTGCTGCCAGGTTATCAA 357928 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 66958 ||| || ||||| |||||| ||| | || | |||||| Sbjct 357929 GTTCCACTGTTGTGACTCCAGAATAAAGCCCATTGATAAC 357968 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207 || |||| | || | | |||||| |||||||| | || ||||| || || | ||| | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267 | ||| |||||||| ||||| ||||| || ||||||||||| || | |||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 65268 GTTGATGCAGTCGGCATAGGTGC 65290 || ||||| || ||||| || || Sbjct 355892 GTCGATGCTGTTGGCATCGGAGC 355914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 64953 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 65012 || || || || || | ||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 355514 GCCATGTGTATGTTGAGAGATTGAGACTGATCAATAAAAGCTCCTCTGTCCGCAGCCATT 355573 Query 65013 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 65053 |||| || |||||||| | ||||||||||| |||||| || Sbjct 355574 TTTAAAATTGTCTTTTGAGAAATTTCCCAAACAGTTTTGTA 355614 >seq2 Length=6207162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617 || || || | ||| | ||||||||| || | |||| | | |||||| || ||||||||| Sbjct 5339095 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5339154 Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 66677 ||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5339155 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5339214 Query 66678 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGA- 66736 | ||| | || || || ||||| || | | | | || || || ||| ||| | || || Sbjct 5339215 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATAT-CATTGTACT-CTCGAC 5339272 Query 66737 -AATAATCGGAGAATG 66751 |||| ||||| ||| Sbjct 5339273 TTATAACCGGAGTATG 5339288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617 || || || | ||| | ||||||||| || | |||| | | |||||| || ||||||||| Sbjct 5350394 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5350453 Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 66677 ||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5350454 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5350513 Query 66678 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGA- 66736 | ||| | || || || ||||| || | | | | || || || ||| ||| | || || Sbjct 5350514 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATAT-CATTGTACT-CTCGAC 5350571 Query 66737 -AATAATCGGAGAATG 66751 |||| ||||| ||| Sbjct 5350572 TTATAACCGGAGTATG 5350587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658128003113800