Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4393 141 9e-29 seq434 132 5e-26 seq26 104 2e-17 seq350 95.1 1e-14 seq30 82.4 8e-11 >seq4393 Length=1805 Score = 141 bits (156), Expect = 9e-29 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||||||||| || | || |||||||| |||||||| || || Sbjct 231 GCCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGA 290 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || ||| | || | |||||||| || || |||||| | |||| |||||||||||| |||| Sbjct 291 CAATGTACGTCCA-TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 349 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 |||||||||||||||| ||| |||| | || | | ||| | || || | || ||| Sbjct 350 GTATGCCTTCTTTGTC-TTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCG 408 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||| | || ||||| || | ||||| ||||| || |||||| Sbjct 409 ACTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCATA 459 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| || || | || | |||||||||||||||||||| || || Sbjct 687 GCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGA 746 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || ||| | || | |||||||| || || |||||| | |||| |||||||||||| |||| Sbjct 747 CAATGTACGTCCA-TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 805 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || |||||||| ||||||| ||| | | ||| | |||||| | || ||| | Sbjct 806 GGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAA 865 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || ||||| || | |||||||| || ||||||||| Sbjct 866 CTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCATA 915 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || || |||| || ||||| || ||||||||||| ||| Sbjct 3 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 62 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||||||||| || |||||| | ||||| ||||| || || ||||| Sbjct 63 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGG 122 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || |||||| || | | ||| | |||||| | | ||| || Sbjct 123 AATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGAC 182 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || ||||| | |||||||| || |||||||| Sbjct 183 TTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||||||||||||||| || | ||| | | |||||||||||||||||| Sbjct 946 GTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCA 1005 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || | |||| ||| |||||||||||||| || |||||||| || ||| |||| | ||| Sbjct 1006 GCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATC-CTGAATTTTAGCTTT 1064 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| || ||| || || | || | || || || || | || Sbjct 1065 GACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGT 1124 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || |||||||| Sbjct 1125 TTTAACAAAAATTTGCAT 1142 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || || |||| |||||||| ||||||||||| || ||| Sbjct 1599 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGA 1658 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||| ||||| || ||||| | |||| ||| |||||||| ||||| Sbjct 1659 CAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 1718 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||| | || | | ||| | ||| |||| | |||| Sbjct 1719 GATACCTTCTTTGTC-TTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCA 1777 Query 139716 CCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | |||||| || || Sbjct 1778 CCTCTAAGGTGATCGTCTTTCCAGT 1802 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||||||||| ||||| || | ||| | | |||||||||||||||||| Sbjct 1402 GTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCA 1461 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | |||| ||| |||||||| ||||| || || |||||||| ||||||| ||| Sbjct 1462 GCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTG 1521 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | || || || || | || | || || || || | ||| Sbjct 1522 ACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTT 1581 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 1582 TTAACAAAAATTTGCAT 1598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || || |||| || ||||| ||||||||||| || || Sbjct 1143 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGA 1202 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| | |||||| ||||| || || ||| | |||| | || ||||| ||||| Sbjct 1203 TAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGG 1262 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || |||||||| || ||| |||| | || | | ||| | ||| || | || ||| | Sbjct 1263 AATACCTTCTTTATC-TTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAA 1321 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || ||||| || | || || || || || ||||| Sbjct 1322 CTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||||||||| || || | | || |||||||| |||||| Sbjct 490 GTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCA 549 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || | |||| ||| |||||||| || || || ||||||||||| ||| |||| | || Sbjct 550 GCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTC-TTGAATTTTGGCCTT 608 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||| |||| | || ||||||| || | || || || || | || Sbjct 609 CACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGT 668 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 669 CTTGACAAAGATCTGCAT 686 >seq434 Length=1254451 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || || |||| || ||||| || ||||||||||| ||| Sbjct 844085 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 844144 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||||||||| || ||||| | |||| |||||||||||| ||||| Sbjct 844145 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGG 844204 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||||||| ||| | | ||| | ||||| | | ||||| Sbjct 844205 GATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCAC 844264 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| || || | || || || || || ||||| Sbjct 844265 CTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 844312 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || ||||| | || |||||||| |||| || |||||||||||||| || || || Sbjct 843855 TGACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCT 843914 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | ||||| ||||||||||| || |||||| | ||||| ||||| || || ||| Sbjct 843915 GAAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGA 843974 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || ||||||||||| ||| |||| | || | | ||| | ||| |||| | || Sbjct 843975 GGGATACCTTCTTTGTC-TTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTC 844033 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | ||| | |||||| || || | || || || || || ||||| Sbjct 844034 CACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq26 Length=4002310 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| | |||| ||||| || || |||||||| || || Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| ||||||||||||||||| | |||| ||| ||||| || ||||| Sbjct 1458241 AGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGG 1458300 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || ||||| || |||||| ||| | | || | ||||||| | ||| ||| Sbjct 1458301 ATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACC 1458360 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || ||||| || || || || || ||||| Sbjct 1458361 TCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 139559 AAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGC 139618 ||||||| || || || || |||||||| || || | ||| || |||||| | | Sbjct 1472160 AAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAAC 1472219 Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 || || |||||| |||| ||||| ||||| || || || |||||||||||||| ||| | Sbjct 1472220 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTC-TTGAAT 1472278 Query 139679 TTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCC 139737 || | || | | || | || || | | ||| ||||| | || | |||||||| Sbjct 1472279 CTTGGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCC 1472338 Query 139738 GGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||| ||||| || ||||| Sbjct 1472339 AGTTAAAGTTTTAACGAAGATCTGCAT 1472365 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | || || ||||| ||||| |||||||| Sbjct 1471300 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCTGAA 1471359 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| || || || || || | || ||||||||||| || ||||| Sbjct 1471360 AGGGTTCTTCCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGA 1471419 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| |||||| ||||| | ||| | ||| || | | || || Sbjct 1471420 ATGCCCTCTTTGTC-TTGAATTTTTGCTTTTACGTTTTCAATTGTATCTGATGCTTCAAC 1471478 Query 139717 CTCAACGGTCACCGTCTTGCC 139737 ||| | ||| | ||||| || Sbjct 1471479 CTCTAAGGTAATTGTCTTTCC 1471499 >seq350 Length=778331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGA 139634 ||||||| || || |||||| | |||| || ||||||||||| ||||| ||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 139635 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTT 139694 ||| | ||||| ||||| || |||||||||||||| ||| || ||| | | || Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 139695 CCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 | | || || | | ||| ||||||| ||| | ||| || || || | |||||||||| Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 139755 ATATTTGCAT 139764 | || ||||| Sbjct 635070 AAATCTGCAT 635061 >seq30 Length=3281913 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/167 (71%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||||||||| || || | |||| | |||||| || ||||||||||| || ||| Sbjct 593755 TCTTCGAGCTGTTTGCCGGCGAAAATCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTG 593814 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || || || || | | || | |||||| | || || ||||| | ||| | Sbjct 593815 TCCTGTATCTTGGCCTTCACGTTCTCAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATA 593874 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTTTT 139776 ||||| || |||| ||||| ||||| |||||||| | | |||||| Sbjct 593875 GTCTTACCCGTCAGGGTTTTCACGAAAATTTGCAT--CCTCTGTTTT 593919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496030236644000