Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq203 134 2e-26 seq2 96.9 5e-15 seq30 93.3 6e-14 >seq203 Length=886859 Score = 134 bits (148), Expect = 2e-26 Identities = 218/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || ||||| ||||| ||||| ||||| | | | ||| | |||||| || |||||||| Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 ||||| | | || |||| ||||| ||||||||||| | || | || || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 ||||||| | |||||||| | ||||| || |||||||||| || | || | | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 80188 CCACTGGCACGAATATT-ACTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 ||| | |||||||| || || | || ||||| || || ||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTG--AGACCAATGCCTCCTGCTGATTTACTAATTA 357223 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 || |||| |||||| |||||| | || || || || || || || |||| | || | Sbjct 357224 CGGCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCA 357283 Query 80306 GAAAACAGCT 80315 |||||| || Sbjct 357284 AAAAACAACT 357293 Score = 109 bits (120), Expect = 8e-19 Identities = 175/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 || |||| | || | | |||||| |||||||| | || ||||| || || | ||| | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 | ||| |||||||| ||||||||||| || || |||||||| || | |||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTT-CTAAGACCGTAT-GATCTGA 79204 || ||||| |||||||| || || | || | | | || | | |||| | | || | Sbjct 355892 GTCGATGCTGTTGGCATCGGAGCAAG-AAGCAGCGAGTTGCGGACCCCGTGTTGGGCT-A 355949 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 |||| |||| | ||| ||| | ||||||||||| || ||||||||| | ||||| Sbjct 355950 TTTTGGCTTTCAAGGATGACCAGTTCCAAAGATCAGTTGGAGTAACATTCCACATATCAT 356009 Query 79265 ATTGTA 79270 | |||| Sbjct 356010 ACTGTA 356015 Score = 109 bits (120), Expect = 8e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| || ||||| ||||||| ||||||||| |||||||||||||| || | Sbjct 357809 CACTGAATACTTTCTTGGTTTCTTTGTGTAAATTTGATACTGCTATTCTGGCGGCCAATA 357868 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||| |||| || || || || || | || |||||||| | || | Sbjct 357869 TAGCATAATCTGCGTGTTTGGTTGTCATCGTAGCAGCAGTCTCTGCTGCCAGGTTATCAA 357928 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 ||| || ||||| |||||| ||| | || | |||||| Sbjct 357929 GTTCCACTGTTGTGACTCCAGAATAAAGCCCATTGATAAC 357968 Score = 107 bits (118), Expect = 3e-18 Identities = 272/411 (66%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 79603 AACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 79662 |||||||| | || | ||||| | ||| ||||| ||||| |||| | | || Sbjct 356516 AACATGTTGACGGCAATGGATGCTAAATTGCAAACTGCTACTTCATCCGGTGAGGAGTAC 356575 Query 79663 TGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTC 79722 || | ||| || || || | |||||| | | ||||| || | |||||| ||||| | Sbjct 356576 TGCACTATCTCGGTACACAAGTTACTGCTTCTGATGGTGCCCAGATTTTGCTGATTCGAC 356635 Query 79723 TTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCT 79782 || ||| || || || ||||| || | || || |||||||||| ||||| | Sbjct 356636 TTGCGGTTGCAGTGGTCTTTGTAAAGCATATAAGGCGTTCCAGTTTCAACTTGAGACTTC 356695 Query 79783 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCT-TTC 79841 | ||| || |||| | || || | | | ||||||| | || | || ||| Sbjct 356696 AGAATAGCCGTCCACAGCGTTCTGGCATCGACTTGCTTCTTGTATTT-TTGCCCCTCTTC 356754 Query 79842 GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTC 79901 ||| || || ||| ||| ||||| | |||||||| ||| ||||||||||| || Sbjct 356755 ATATGTGGTGTACAATTTTTCAAACTCAGCGCCCCAAACGTCGGGCAATCCAGGACACTC 356814 Query 79902 GTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGG 79961 | |||||||| | ||||| | ||| || |||| || ||| || | || || Sbjct 356815 TTTGGGACACATGAGACTCCACTTTTCATTATTTAAAACTCTTTGCATGAACAAGTCTGG 356874 Query 79962 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 ||||| ||||| ||||||||| || | |||| |||| || || ||||| Sbjct 356875 GATCCACAGAGCGTAAAATAGATCCCTTGCTCTACGCTCTTCTTTACCTGT 356925 Score = 107 bits (118), Expect = 3e-18 Identities = 193/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || ||||| || || || ||| | ||| ||| | || ||||| || || ||||| Sbjct 357363 CTGGACATCTGTTGGCGTTGAGTACAGGCAGAAAAAAGCGTTGGAGACGCATGTGTAAAG 357422 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAAT 80432 | ||||||| | ||||| || || ||| || || | ||| | ||| || || Sbjct 357423 TAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTGTCAAGATCTTCCTTG-TGGAT 357481 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 | || || || ||||||| ||| |||||||| | |||||| | || | ||| ||||| Sbjct 357482 GGCAACAGCAACTCGCATTATCATATGCTGAGGACGTTCAACTACTTTATCATTAATTTT 357541 Query 80493 CAACAAGTAAGATTTT-TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551 || ||| || || | || ||||||||||| |||||||| ||||| |||||||| | Sbjct 357542 TAA-AAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATAATTGTAACCAAAGTCTCTAT 357600 Query 80552 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 80588 | ||||| || | || || ||| ||||||| | ||| Sbjct 357601 CATAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 78832 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 78891 || || || || || | ||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 355514 GCCATGTGTATGTTGAGAGATTGAGACTGATCAATAAAAGCTCCTCTGTCCGCAGCCATT 355573 Query 78892 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 78932 |||| || |||||||| | ||||||||||| |||||| || Sbjct 355574 TTTAAAATTGTCTTTTGAGAAATTTCCCAAACAGTTTTGTA 355614 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79327 GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTG 79386 || || ||||| || ||||| | || ||||| || | |||||||||||||| ||||| Sbjct 356151 GCCAACTCACAGCTGGCCTCCAGAGCGCCGTAGTACAAGGTTTCGAAAATCTGAATATTG 356210 Query 79387 AGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 79446 || | ||| |||| | || ||||||||| || | || | || || ||||| ||| Sbjct 356211 AGCTTTTGAGCTTTTTCACTTTCAAATGGAAAACGCATCAGCAAGAATGCATCTGCCAAT 356270 Query 79447 CCTTGAACACCAATACC 79463 ||||||| |||||||| Sbjct 356271 CCTTGAATGCCAATACC 356287 >seq2 Length=6207162 Score = 96.9 bits (106), Expect = 5e-15 Identities = 209/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 |||| ||| | | ||||| ||| | |||||| | |||||||| |||||||| |||| Sbjct 5338607 TATTTTTTCTCATGTCGAGAAACTGGAAAATATCGGCGTGCCACGGCTCCAAGTAGATGG 5338666 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || | ||| |||||| | || ||||| || | | || ||| |||| ||| Sbjct 5338667 CGAACGCACCTGATCGCTTGTTTTCACCTTGATCGGTGAAACAGGCTGTGCTATTGAAAA 5338726 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 ||||| ||| ||| | ||||| || ||||| || || ||| | || | || Sbjct 5338727 TTCTCAGCATGGGAGCTAACCCATTTGACGTACCGTTAGTGCCGCAAATTCTTGTGCCCG 5338786 Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 || |||||| || | ||| || ||| | |||| ||| ||||| || | Sbjct 5338787 AGGAACGAATGTTGTGCACACTTAGGCCGATTTCTCCTGATGATTTGCTGATTACGGCAC 5338846 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 ||| ||| |||||||| | || || || || || || || |||| | |||||||||| Sbjct 5338847 ATCTTTTCAACGTATCGAAAATTCCTTCGATACTGTCGTCCGTCATCGTGAGTAGAAAAC 5338906 Query 80312 AGCTAGACATTTG 80324 | || || |||| Sbjct 5338907 AACTGGAAGTTTG 5338919 Score = 96.9 bits (106), Expect = 5e-15 Identities = 209/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 |||| ||| | | ||||| ||| | |||||| | |||||||| |||||||| |||| Sbjct 5349906 TATTTTTTCTCATGTCGAGAAACTGGAAAATATCGGCGTGCCACGGCTCCAAGTAGATGG 5349965 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || | ||| |||||| | || ||||| || | | || ||| |||| ||| Sbjct 5349966 CGAACGCACCTGATCGCTTGTTTTCACCTTGATCGGTGAAACAGGCTGTGCTATTGAAAA 5350025 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 ||||| ||| ||| | ||||| || ||||| || || ||| | || | || Sbjct 5350026 TTCTCAGCATGGGAGCTAACCCATTTGACGTACCGTTAGTGCCGCAAATTCTTGTGCCCG 5350085 Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 || |||||| || | ||| || ||| | |||| ||| ||||| || | Sbjct 5350086 AGGAACGAATGTTGTGCACACTTAGGCCGATTTCTCCTGATGATTTGCTGATTACGGCAC 5350145 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 ||| ||| |||||||| | || || || || || || || |||| | |||||||||| Sbjct 5350146 ATCTTTTCAACGTATCGAAAATTCCTTCGATACTGTCGTCCGTCATCGTGAGTAGAAAAC 5350205 Query 80312 AGCTAGACATTTG 80324 | || || |||| Sbjct 5350206 AACTGGAAGTTTG 5350218 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 || || || | ||| | ||||||||| || | |||| | | ||||||||| ||||||||| Sbjct 5339095 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5339154 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 |||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5339155 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5339214 Query 80557 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 80600 | ||| | || || || ||||| || | | | | || || ||| Sbjct 5339215 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATATC 5339258 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 || || || | ||| | ||||||||| || | |||| | | ||||||||| ||||||||| Sbjct 5350394 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5350453 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 |||||| | | |||||||| || || |||| || ||||| ||||||| || ||| Sbjct 5350454 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5350513 Query 80557 ATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 80600 | ||| | || || || ||||| || | | | | || || ||| Sbjct 5350514 TTGATAGCAGAATTCAGCTTATCTTTGTGTCTTTGAATTATATC 5350557 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | ||||||||| || || |||| || || || |||||||| || ||||| Sbjct 5339648 CACTAAACATTTTTTTTGTCTCTTTATGTAATTTCGAAACTGCTATTCTTGCAGCTAATG 5339707 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | | |||||||| ||||| || || || || || |||| || |||| | |||| | Sbjct 5339708 TAGAATAATCTGCATGTTTGGTTGTCATTGTAGCAGCAGTTTCTGCCGCCAAATTGTCAA 5339767 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 | ||| ||||||||||| ||| | || | |||||| Sbjct 5339768 GCTTTACTGTTGTTACTCCTGGATAGAGGCCCTTGATAAC 5339807 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | ||||||||| || || |||| || || || |||||||| || ||||| Sbjct 5350948 CACTAAACATTTTTTTTGTCTCTTTATGTAATTTCGAAACTGCTATTCTTGCAGCTAATG 5351007 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | | |||||||| ||||| || || || || || |||| || |||| | |||| | Sbjct 5351008 TAGAATAATCTGCATGTTTGGTTGTCATTGTAGCAGCAGTTTCTGCCGCCAAATTGTCAA 5351067 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 | ||| ||||||||||| ||| | || | |||||| Sbjct 5351068 GCTTTACTGTTGTTACTCCTGGATAGAGGCCCTTGATAAC 5351107 >seq30 Length=3281913 Score = 93.3 bits (102), Expect = 6e-14 Identities = 147/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || |||||||| || || || || ||||| || || |||||||| |||||||| || Sbjct 991656 ATGAGTTCGTTACTGAAGGTAAGACCCGGCATGAGTCCTCGCTTTTTCAGCCAAAAAATA 991597 Query 50056 GACGCAAA--TGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCT 50113 | ||||| || | | ||||| |||| ||||| ||||| || || |||| || | | Sbjct 991596 GCTGCAAAACTGCCACTGAAAA--AGATACCTTCGACTGCAGCGAAAGCAATAACACGTT 991539 Query 50114 CTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 50170 | || | | ||||| |||| ||||| || ||||||| | ||| || || | | Sbjct 991538 CGGCAAATGTAGCGCTCTCATTGCTAATCCAGTTGAGAGCCCAGTTGGCTTTTTTAGTAA 991479 Query 50171 CACAAGGCATCGTTTCTATGGCATTAAA 50198 |||| |||| || || ||||||||||| Sbjct 991478 CACATGGCAGAGTCTCAATGGCATTAAA 991451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || || | ||| ||||| || |||||||| ||||| || || || ||||| ||||| | | Sbjct 991051 TTTGAAAGATCCACTTCCTCTACTGTCCAGAATGAAGCTTCCGCTTTTTTGTACATCTGC 990992 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 |||||||| | |||| ||||||||||| |||||||| |||| ||| Sbjct 990991 CAGATGTCTGGCCATTGAATTGGGAAAATGACAAATCTTCTTGGGTTT 990944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718219912829800