Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4393 150 2e-31 seq434 114 1e-20 seq30 96.9 4e-15 seq26 96.9 4e-15 >seq4393 Length=1805 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||||||||||||||| | || || ||||| || |||||||| || Sbjct 231 GCCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGA 290 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| | || | ||||||||||| || |||||| | |||| |||||||||||| |||| Sbjct 291 CAATGTACGTCCA-TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 349 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 |||||||||||||||| |||||| || | | ||| | ||| || | || || | Sbjct 350 GTATGCCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGA 409 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | || ||||| || | ||||| ||||| || |||||| Sbjct 410 CTTCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCATA 459 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||| || || | ||| | ||||| |||||||| |||||||| || Sbjct 687 GCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGA 746 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| | || | ||||||||||| || |||||| | |||| |||||||||||| |||| Sbjct 747 CAATGTACGTCCA-TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAG 805 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || |||||||| |||||| ||| | | ||| | ||||| | || || | Sbjct 806 GGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAA 865 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | || ||||| || | |||||||| || ||||||||| Sbjct 866 CTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCATA 915 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | |||||| |||||||| ||||| || || | ||| | | |||||||| || Sbjct 939 ATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTG 998 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||||||||| | |||| ||| |||||||||||||| || |||||||| || |||||| Sbjct 999 TTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTT 1058 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| | | || | |||||| | || || ||||| | ||| | || || || || Sbjct 1059 AGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGT 1118 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||| || || |||||||| Sbjct 1119 AAGAGTTTTAACAAAAATTTGCAT 1142 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||||||||||||||| || || || || | ||| | | |||||||| || Sbjct 1395 ATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTG 1454 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||||||||| | |||| ||| |||||||| ||||| || || |||||||| ||||| Sbjct 1455 TTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTT 1514 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | ||| | | ||| | |||||| | || ||| ||||| | || | || || || || Sbjct 1515 TGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGT 1574 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||| || || |||||||| Sbjct 1575 TAGGGTTTTAACAAAAATTTGCAT 1598 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | |||||| || ||||||| ||||| || ||||| |||||||| ||| Sbjct 1599 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGA 1658 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| | ||||| || || || ||||| | |||| ||| |||||||| ||||| Sbjct 1659 CAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 1718 Query 143077 TATGCCTTCTTTGTCGGTAATTTT 143100 || ||||||||||| |||||| Sbjct 1719 GATACCTTCTTTGTCTTGAATTTT 1742 >seq434 Length=1254451 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | |||||| || ||||||| || || || || || ||||| || ||| Sbjct 844085 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 844144 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| | |||||||| || || ||||| | |||| |||||||||||| ||||| Sbjct 844145 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGG 844204 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| |||||| ||| | | ||| | |||||| | | ||| || Sbjct 844205 GATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCAC 844264 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| || || | || || || || || ||||| Sbjct 844265 CTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 844312 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | || ||||||||||||| ||| || |||||||| || ||||| || Sbjct 843855 TGACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCT 843914 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | ||||| |||||||| || || |||||| | ||||| ||||| || || ||| Sbjct 843915 GAAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGA 843974 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||||||||| |||||| || | | ||| | || || | | ||| Sbjct 843975 GGGATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCC 844034 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | |||||| || || | || || || || || ||||| Sbjct 844035 ACCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq30 Length=3281913 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 50627 TCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGT 50686 ||||||| ||||| || || ||| |||| ||||| || || ||| | || |||| || Sbjct 991835 TCAAAGATGCCGTTGAAATTGAACAAGAATTTTTAACTGATGCTCTGCCAGTGGAGATGA 991894 Query 50687 TGGGCATGAAC-GCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTG 50745 | ||||||||| ||| | | |||||| |||||||||| ||||||||||||||| || || Sbjct 991895 TTGGCATGAACTGCAAGC-TCATGTGCCAGTACATTGAATTTGTTGCAGACAGACTGCTG 991953 Query 50746 TTGCAGCTGGGA 50757 | |||| ||| Sbjct 991954 CAGGAGCTTGGA 991965 >seq26 Length=4002310 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | ||| | ||| | ||| |||||||| || || ||||| || Sbjct 1457952 GCCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGA 1458011 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || |||||||||||||| |||||| |||| ||||| ||||| || || || Sbjct 1458012 CAAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGG 1458071 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||||| || | | || | || || | | ||| || Sbjct 1458072 AATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGAC 1458131 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || ||||||||||| || || |||||||| Sbjct 1458132 CTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | || | ||| ||||| || || ||||||||||| Sbjct 1458409 CCTCCACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAA 1458468 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || || |||||| |||| ||||| ||||| || ||||| Sbjct 1458469 AGCGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 1458528 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTA 143108 ||||| |||||||| ||||||| ||||| Sbjct 1458529 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTA 1458559 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| ||| | ||||| |||||||| || || |||||||| || Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| ||||| ||||||||||| | |||| ||| ||||| || ||||| Sbjct 1458241 AGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGG 1458300 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||||| ||| | | || | ||||| | | || || Sbjct 1458301 ATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACC 1458360 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| || || || || || ||||| Sbjct 1458361 TCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| | || | ||| |||||||| || || || ||||| Sbjct 1471300 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCTGAA 1471359 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| ||||| || || || | || ||||||||||| || ||||| Sbjct 1471360 AGGGTTCTTCCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGAGGA 1471419 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTA 143108 ||||| |||||||| ||||||| ||||| Sbjct 1471420 ATGCCCTCTTTGTCTTGAATTTTTGCTTTTA 1471450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 142979 AAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGT 143038 || |||| || ||||| || || |||||||| || | ||| || |||||| | Sbjct 1472160 AAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAAC 1472219 Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 || || |||||| |||| ||||| ||||| || || || |||||||||||||| ||| Sbjct 1472220 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATC 1472279 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 || || | | || | || || | | || || || | ||| | |||||||| Sbjct 1472280 TTGGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCA 1472339 Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||| ||||| || ||||| Sbjct 1472340 GTTAAAGTTTTAACGAAGATCTGCAT 1472365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506979891332400