Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 seq30 98.7 1e-15 seq203 87.8 3e-12 >seq2 Length=6207162 Score = 141 bits (156), Expect = 1e-28 Identities = 258/376 (69%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| ||||| ||||||||||| || ||| | |||||||||||||||||| | || Sbjct 5349811 CGAGCAAGGGAATTGTTTTATGCTCTTTGGATCCCAGATTTGTTCATGAAGAGGGTTTTG 5349752 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 ||| ||| | |||||||| |||||||| | || ||||| || ||| |||| Sbjct 5349751 GACAACGGCAAGTGGAGCCTCATGTGCCCGCAACAGTGTCCCGGATTGCATGATGTCTGG 5349692 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCC--TACGAGCAAGAGGGCCGATACGTGAGAC 97161 || | || || || || | | ||| |||||| || ||| || | || | Sbjct 5349691 GGAAACGATTTCGA--CCGATTGTACGAAAAGTACGAGAGTGACGGCAAATTCAAGAAGC 5349634 Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | |||| || | | ||||||| ||| ||| ||| | ||||||| || ||||||| | Sbjct 5349633 AAATCGACGCCAGGAAGCTGTGGACGGCGATCCTGAAGTCTCAGGTGGAAACTGGAATGC 5349574 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 ||||||| || |||||||| | ||||| || || || | | ||||||||| Sbjct 5349573 CGTACATGCTTTACAAGGACCACTGCAATCGAAAGTCGAATCAGCAGAATCTGGGCACCA 5349514 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 ||||| || ||| |||| || || || ||| | ||| |||| ||||| || ||||| Sbjct 5349513 TCAAGAGCAGCAACTTGTGTACTGAGATCGTACAATACTCCTCACCGGATGAAGTGGCAG 5349454 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| | | ||||| Sbjct 5349453 TGTGCAATTTAGCATC 5349438 Score = 132 bits (146), Expect = 7e-26 Identities = 256/376 (68%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| ||||| || |||||||| || ||| | |||||||||||||||||| | || Sbjct 5338512 CGAGCAAGGGAATTATTTTATGCTCTTTGGATCCCAGATTTGTTCATGAAGAGGGTTTTG 5338453 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 ||| ||| | |||||||| |||||||| | || ||||| || ||| |||| Sbjct 5338452 GACAACGGCAAGTGGAGCCTCATGTGCCCGCAACAGTGTCCCGGATTGCATGATGTCTGG 5338393 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCC--TACGAGCAAGAGGGCCGATACGTGAGAC 97161 || | || || || || | | ||| |||||| || ||| || | || | Sbjct 5338392 GGAAACGATTTCGA--CCGATTGTACGAAAAGTACGAGAGTGACGGCAAATTCAAGAAGC 5338335 Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | |||| || | | ||||||| ||| ||| ||| ||||||| || ||||||| | Sbjct 5338334 AAATCGACGCCAGGAAGCTGTGGACGGCGATCCTGAATTCTCAGGTGGAAACTGGAATGC 5338275 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 ||||||| || |||||||| | ||||| || || || | | ||||||||| Sbjct 5338274 CGTACATGCTTTACAAGGACCACTGCAATCGAAAGTCAAATCAGCAGAATCTGGGCACCA 5338215 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 ||||| || ||| |||| || || || ||| | ||| |||| ||||| || ||||| Sbjct 5338214 TCAAGAGCAGCAACTTGTGTACTGAGATCGTACAATACTCCTCACCGGATGAAGTGGCAG 5338155 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| | | ||||| Sbjct 5338154 TGTGCAATTTAGCATC 5338139 >seq30 Length=3281913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 125622 GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAA 125681 ||||| |||| | |||| | | |||||||| || |||||||| ||| |||| || Sbjct 991816 GAAAAAGTCACCTCCATTATCAAAGATGCCGTTGAAATTGAACAAGAATTTTTAACTGAT 991875 Query 125682 TCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTT 125741 | || || || ||||||||||||||||||||||| |||||| ||||||| || ||| Sbjct 991876 GCTCTGCCAGTGGAGATGATTGGCATGAACTGCAAGCTCATGTGCCAGTACATTGAATTT 991935 Query 125742 GTGGCAGATCGTCTACTGTACGAG 125765 || ||||| | || ||| | ||| Sbjct 991936 GTTGCAGACAGACTGCTGCAGGAG 991959 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||| || || || || ||||| || || |||||||| || || |||||||| Sbjct 991550 GCTTTCGCTGCAGTCGAAGGTATCTTTTTCAGTGGCAGTTTTGCAGCTATTTTTTGGCTG 991609 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 || ||||| ||||||||||| || || || ||||||||| | || ||||| || ||| Sbjct 991610 AAAAAGCGAGGACTCATGCCGGGTCTTACCTTCAGTAACGAACTCATCTCTCGCGATGAG 991669 Query 125553 G 125553 | Sbjct 991670 G 991670 >seq203 Length=886859 Score = 87.8 bits (96), Expect = 3e-12 Identities = 248/378 (66%), Gaps = 10/378 (3%) Strand=Plus/Minus Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATG--AAGCGCGTCAA 97042 |||| ||||| | ||||| || || ||| | ||||| ||||||||| ||| | | || Sbjct 356906 GAGCAAGGGATCTATTTTACGCTCTGTGGATCCCAGACTTGTTCATGCAAAGAGTTTTAA 356847 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | || | ||||| || ||||| ||| | || || || || |||| || Sbjct 356846 ATAA--TGAAAAGTGGAGTCTCATGTGTCCCAAAGAGTGTCCTGGATTGCCCGACGTTTG 356789 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA---TACGTGAG 97159 ||||| |||||||| |||||| | || || |||||| | | ||| || Sbjct 356788 GGGCGCTGAGTTTGAAAAATTGTACACCACATATGA---AGAGGGGCAAAAATACAAGAA 356732 Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | ||||||||| || ||||||| ||| || ||| | |||| || || |||||||| Sbjct 356731 GCAAGTCGATGCCAGAACGCTGTGGACGGCTATTCTGAAGTCTCAAGTTGAAACTGGAAC 356672 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || || || || ||||| || | || ||||| || || | | ||||||| Sbjct 356671 GCCTTATATGCTTTACAAAGACCACTGCAACCGCAAGTCGAATCAGCAAAATCTGGGCAC 356612 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 ||||| || || |||| || || || || ||||| |||| ||||| || || Sbjct 356611 CATCAGAAGCAGTAACTTGTGTACCGAGATAGTGCAGTACTCCTCACCGGATGAAGTAGC 356552 Query 97340 AGTTTGCGTTCTGGCATC 97357 ||||||| | | ||||| Sbjct 356551 AGTTTGCAATTTAGCATC 356534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741008761658200