Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4393 131 1e-25 seq434 131 1e-25 seq26 116 3e-21 seq350 109 4e-19 >seq4393 Length=1805 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||||||||| || || || ||||| || ||| || | | | ||| Sbjct 19 AAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCT 78 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || |||||||| | |||| ||||||||||| |||||||||||||| || Sbjct 79 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATCC 138 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || |||| || || || | || || ||||||||||| ||| Sbjct 139 TGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGTT 198 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||||||||||||||||||||| Sbjct 199 TTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 ||||||||||| || || || ||||| || |||||||| || | ||| || | | Sbjct 247 AAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCG--ACAATGTACGTCCAT 304 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | ||| |||||||| | ||||||||||| || || || || |||||||||| Sbjct 305 CTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTGT 364 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | |||||| ||| || |||| || ||||| || || |||| ||| || | Sbjct 365 CTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATTG 424 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || |||||||| || || || |||||| Sbjct 425 TTTTGCCAGTTAGAGTTTTAACGAAGATCTGCATA 459 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || || || ||||| ||||| ||| | | | | || || | || Sbjct 483 ATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTG 542 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | |||||||| || || || ||| || ||||||||||| |||||| Sbjct 543 CTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 602 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| |||| || |||||| | ||| || || | || |||||||| || || Sbjct 603 GGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGT 662 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| Sbjct 663 GAGAGTCTTGACAAAGATCTGCAT 686 Score = 102 bits (112), Expect = 6e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| | | ||| || | ||| ||||| || |||||||| |||||||| || Sbjct 686 TGCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCG 745 Query 15195 TTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252 | ||| || | ||||| | ||| |||||||| | ||||||||||| || || Sbjct 746 --ACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGG 803 Query 15253 TGGAATTCCTTCTTTGT-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTT 15311 || || || ||||||| | | ||||||| || ||| |||| || || || | Sbjct 804 AGGGATACCCTCTTTGTCCTGGATTTTTGCT-TTGACATTTTCAATTGTGTCAGAGGCCT 862 Query 15312 CTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || | || |||||||| || || |||||||||||||| ||||||||| Sbjct 863 CAACTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCATA 915 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || |||||||| ||||| || || || | | | | ||||| | || Sbjct 939 ATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTG 998 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | |||||||| || || ||| || || |||||||| || |||||| Sbjct 999 TTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTT 1058 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || || ||| || || |||| || || |||||||| | Sbjct 1059 AGCT-TTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAG 1117 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | |||||||| |||||||||||||| Sbjct 1118 TAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||||||||| || ||||| |||||||| || ||| | | | ||||| Sbjct 1159 AAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCT 1218 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || || || | ||||| | ||||| || ||||| |||||||| || Sbjct 1219 TCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCT 1278 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| ||| || |||| || ||||| || || || | || |||||| Sbjct 1279 TGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGTT 1338 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| || ||||| Sbjct 1339 TTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || || ||||| |||||||| ||| || | | | ||| Sbjct 1615 AAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGTACGGCCATCT 1674 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||||||| | |||||||| || || || || || ||||||||||| Sbjct 1675 TCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCTTCTTTGTCT 1734 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || |||| || |||||| | ||| || |||||||| || || Sbjct 1735 TGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTC 1794 Query 15332 TTACCTGTCAG 15342 || || || || Sbjct 1795 TTTCCAGTGAG 1805 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || |||||||| || || || || || | | | | ||||| | || Sbjct 1395 ATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTG 1454 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | |||||||| || || || || || || |||||||| ||||| Sbjct 1455 TTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTT 1514 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| |||| || || || ||| || |||| ||||| ||||| |||| Sbjct 1515 TGCT-TTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTG 1573 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| |||||||||||||| Sbjct 1574 TTAGGGTTTTAACAAAAATTTGCAT 1598 >seq434 Length=1254451 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || ||||||||||||||| ||||| |||||||| || ||||| || Sbjct 843858 CCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAA 843917 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || |||||||| | |||| ||||||||||| || Sbjct 843918 AGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGG 843977 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| || |||| || |||||| | ||| || Sbjct 843978 ATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACC 844037 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || || || || ||||| || ||||| || ||||| Sbjct 844038 TCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 Score = 102 bits (112), Expect = 6e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||||||||| || || || ||||| || ||| || | | | ||| Sbjct 844101 AAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCT 844160 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC- 15270 || | || ||||||||| | ||||||||||| || || || || || |||||||| Sbjct 844161 TCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCT 844220 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||||||| || ||| |||| || || || | ||| || |||||||| || || Sbjct 844221 TGGATTTTTGCT-TTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGT 844279 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || || || || || || ||||| || ||||| |||| Sbjct 844280 CTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTG 844317 >seq26 Length=4002310 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAA--TTCTCGCGTCT 15211 ||| | ||| || ||||| ||||| || || ||||| || | | || |||| | ||| Sbjct 1457970 AACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTC--TGACAAGGTTCTACCATCT 1458027 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | || | ||| || ||||| ||||| ||||| || || Sbjct 1458028 TCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACCTTCCTTATCT 1458087 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| | || |||||||| | ||| || || |||||||||||| Sbjct 1458088 TGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACCTCCAAGGTAATGGTT 1458147 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| ||||| |||||||||||||| Sbjct 1458148 TTACCAGTCAATGTTTTAACAAAAATTTGCAT 1458179 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15158 AAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAAT 15217 || ||||||||||| || || || |||||||| || || | || |||||||||| Sbjct 1472160 AAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAAC 1472219 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 || |||||||| | || | ||| || ||||| || || ||||||||||| ||| Sbjct 1472220 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATC 1472279 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| ||| ||| | || |||||||| || || ||||| |||||||| || || Sbjct 1472280 TTGGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCA 1472339 Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| || || || ||||| Sbjct 1472340 GTTAAAGTTTTAACGAAGATCTGCAT 1472365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | || | ||| || ||||| ||||| ||||||||||| ||| ||| | Sbjct 1471159 CCAGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGAATCTTGGCC 1471218 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| ||||||||| | ||| || || || || ||||| || || |||| Sbjct 1471219 TTGACATTTTCGATGGTATCGGAAGCTTCGACTTCCAATGTGATGGTCTTGCCAGTCAAG 1471278 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 1471279 GTCTTGACGAAAATTTGCAT 1471298 >seq350 Length=778331 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| || ||||||||| ||| | | | || || | |||||||||||| | | Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 |||| | || |||||| |||||| ||||||||||| || ||| || ||| ||| Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | |||||||| | || || || | ||| || |||||||| || || |||||||| | Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 15354 AAATTTGCATATT 15366 |||| ||||| || Sbjct 635070 AAATCTGCATCTT 635058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362155165448745