Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4393 105 4e-18 >seq4393 Length=1805 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || ||||| | || |||||||| || || ||||| || ||||| | || Sbjct 244 CGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCA 303 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | |||||| ||| ||| || ||||||||||| || | |||||||||||||| Sbjct 304 TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTG 363 Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || | ||| || || ||| |||||| || || | || || || ||| Sbjct 364 TCTTGAATTTTAGCC---TTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTT 420 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || |||||||| ||||| || ||||| Sbjct 421 ATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || | ||| | || ||||||||||| || ||||| || ||||| | || Sbjct 700 CGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCA 759 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | |||||| ||| ||| || ||||||||||| || | || || || ||||| Sbjct 760 TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTG 819 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| ||| ||||| || | ||| ||||| || Sbjct 820 TCCTGGATTTTTGC---TTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTG 876 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||||||||| || |||||||| Sbjct 877 ATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318756445619610