Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4393 111 1e-19 seq434 102 6e-17 >seq4393 Length=1805 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||||||||||||||| || | || || |||| |||| || | ||||| || || || Sbjct 1408 TCTTTTTGAATATTATAGTC-TGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAA 1466 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| || ||||| || |||| | ||| ||||| ||| |||||| |||||| | Sbjct 1467 AATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATT 1526 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| || |||| | || || || | |||||||||||| || |||| || || || Sbjct 1527 TTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAAC 1586 Query 44110 AAATATTTGCATG 44122 ||| ||||||||| Sbjct 1587 AAAAATTTGCATG 1599 Score = 109 bits (120), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 |||||||||||| ||||| || | || || |||| |||| || | ||||| || || | Sbjct 951 CTCTTTTTGAATGTTATAGTC-TGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGA 1009 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | ||||| || ||||| || |||| | |||||||||||| |||||| |||||| Sbjct 1010 AAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTTAGCTTTGACAT 1069 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 | ||| || || | | ||| || || | || ||||||||||| || | ||| || | Sbjct 1070 TCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAA 1129 Query 44109 CAAATATTTGCATG 44122 |||| ||||||||| Sbjct 1130 CAAAAATTTGCATG 1143 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| || ||| ||| || ||||| ||||| ||| | | ||| |||| Sbjct 19 AAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCT 78 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || || || ||||| |||| ||||| ||||| |||| | ||||||||||| Sbjct 79 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATCC 138 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||||| | ||| || || | | ||| || || | ||||| ||| Sbjct 139 TGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGTT 198 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||||| | ||| || ||||| ||||||||| Sbjct 199 TTACCGGTAAGAGTTTTTACAAAAATTTGCATG 231 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | | ||| || | |||||| || |||||||||||| || || || Sbjct 688 CCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGAC 747 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| |||| || | ||| || || ||||| ||||| |||||||| || |||| Sbjct 748 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGG 807 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| ||||| || |||||| |||||| | ||| || || | | ||| || Sbjct 808 ATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACT 867 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||| || ||||| |||||||| Sbjct 868 TCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| || ||| ||| |||||||| || || || || | ||| | || Sbjct 1159 AAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCT 1218 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||| ||||| ||||| | || || || |||| | ||||||||||||| Sbjct 1219 TCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCT 1278 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||||| | ||| ||||| | | ||| || || | || || ||| Sbjct 1279 TGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGTT 1338 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || | |||||| ||||| || |||||| Sbjct 1339 TTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 >seq434 Length=1254451 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| | || ||| || ||||| || ||| ||||||||||||||| || || | Sbjct 843857 ACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTC-TG 843915 Query 43954 TAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || |||| || | || || || ||||| |||| ||||| ||||| ||| Sbjct 843916 AAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAG 843975 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||| ||| |||||| ||||| | ||| ||||| | | |||| Sbjct 843976 GGATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCA 844035 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || | || || || || || || | |||||| ||||| || |||||| Sbjct 844036 CCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATG 844085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354754056625860