Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq26 91.5 1e-13 seq17 89.7 4e-13 >seq26 Length=4002310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 19972 TTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTT 20031 |||| | || ||||| || | | | || | ||||||||| |||||||| || || || Sbjct 1457943 TTATAAGTTGCCTCCACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATT 1458002 Query 20032 GTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTG 20091 ||| || || ||| || |||||| | |||||| || ||| | || || | ||| || Sbjct 1458003 GTAGTCTGACAAGGTTCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTG 1458062 Query 20092 ATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCC 20151 || ||| | ||||| || || ||||| || || | | | | ||| Sbjct 1458063 GTCAGGGGGAATACCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGA 1458122 Query 20152 AGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || ||| |||| |||||||||||| || ||||| ||||| ||||||||||||||| Sbjct 1458123 AGCTTCGACCTCCAAGGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCATT 1458180 >seq17 Length=3953650 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 102852 GTCAAAAATCAAGGCACGTGCGGTGCGTGTTGGGCGTTCGC--TACCCTTGGCAGTTTAG 102909 || |||||||||||| |||||| | |||||||| ||| | | || |||| | | Sbjct 1852669 GTGAAAAATCAAGGCCAGTGCGGCTCCTGTTGGGCATTCTCAGTGACC--GGCAACGTGG 1852612 Query 102910 AAAGCCAGTTCGCAATCAAACACGATCAGCTCATAAATTTGTCAGAGCAACAGCTCATCG 102969 || |||||| ||| || ||||||| ||||| || || || ||||| ||||||| | Sbjct 1852611 AAGGCCAGTACGCCATAAAACACGGCCAGCTGATGTCGTTCTCGGAGCAGGAGCTCATTG 1852552 Query 102970 ACTGCGATTTTGTGGACATGGGCTGTGACGGGGGTTTGCTGCACACGGCGTACGAGGCCG 103029 ||||||| |||||| ||||| |||| || ||| | | || |||||| || Sbjct 1852551 ACTGCGACAAGTTGGACAGTGGCTGCAACGGAGGCCTGCCGGATACAGCGTACAGAGCTA 1852492 Query 103030 TCATGAACATGGGCGGCATACAAGCCGAAAATGATTATCCGTACGAAGCAAACAACG 103086 || | | |||| ||| | || | |||| || ||||| ||||| || | |||| Sbjct 1852491 TCGAGGAATTGGGAGGCCTGGAAACAGAAACGGACTATCCCTACGAGGCGGAGAACG 1852435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419559355800045