Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq30 86.0 5e-12 >seq30 Length=3281913 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || || ||||||| ||| |||| ||||| |||||||| |||||||| || ||||| | | Sbjct 992151 TTCTGGTATTCGCCTACTTTTTTCTCAAAGAAGTTTGTCTTTCCTTCCAATGAAATTTGT 992092 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||| || ||||||||||||| Sbjct 992091 TCCATGAAGTCGAAAGGATTTT 992070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504 ||||| |||||||| || ||||| || || |||||||||||||| || || | ||||||| Sbjct 991322 TACATCTCTGAATGGATGTTTTCTATGGCAATTTGGAAACCATAGAAGCAACGAGCCTCT 991263 Query 13505 GATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACT 13563 | || || ||||| || | || ||||| |||| || || || || || || || Sbjct 991262 GTAACTTGTACTTCTTGACT-GAACCTTTCCACTAAATTCTCATTGACAATGCCATCTGA 991204 Query 13564 AGCAGCaaaaaaaGCAAGTATGTGC 13588 ||||| ||||| || | || |||| Sbjct 991203 GGCAGCGAAAAATGCCAATACGTGC 991179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430953799603890