Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq26 179 9e-40 seq4393 167 5e-36 seq434 156 1e-32 seq30 116 9e-21 seq363 86.0 1e-11 seq353 86.0 1e-11 >seq26 Length=4002310 Score = 179 bits (198), Expect = 9e-40 Identities = 168/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||| ||| ||||||||||| ||||| ||||| || | |||||||| || Sbjct 1457967 AAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGTTCTACCATC 1458026 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||||||||||||||| || || | ||| || ||||| || || ||||| ||||| Sbjct 1458027 TTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACCTTCCTTATC 1458086 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || || || ||||| || | |||||| || ||| ||||| | ||||| || Sbjct 1458087 TTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACCTCCAAGGTAATGGT 1458146 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||||| | |||||| ||||| || |||||| Sbjct 1458147 TTTACCAGTCAATGTTTTAACAAAAATTTGCATT 1458180 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | |||||||| |||||||| || |||||| Sbjct 1458178 ATTCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCA 1458237 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| ||||| || || ||||| ||||| ||||| | | ||| || || ||| Sbjct 1458238 GAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGA 1458297 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||||||||| || || ||||| || || || | || ||| | || Sbjct 1458298 GGGATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCG 1458357 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||||| || |||||||| ||||| | || || ||||| ||||||||| Sbjct 1458358 ACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1458408 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | ||| |||||||||||||||||||| || Sbjct 1471297 ATTCCTCCACGAAGACGGAGAACCAGGTGGAGTGTTGATTCTTTCTGAATATTATAATCT 1471356 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| |||||||| ||||| ||||| || ||||| || | || || || ||| Sbjct 1471357 GAAAGGGTTCTTCCGTCTTCCAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCTGGA 1471416 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || ||||| ||||||||||| ||||| | ||||| | ||| Sbjct 1471417 GGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATCTGATGCTTCA 1471476 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 ||||||| ||||| ||||| || Sbjct 1471477 ACCTCTAAGGTAATTGTCTTTCC 1471499 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | ||| ||||| |||||||| || || ||| Sbjct 1458406 ATTCCTCCACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCA 1458465 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || || ||||||| || || |||||||| || || | ||| || || ||| Sbjct 1458466 GAAAGCGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGA 1458525 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || || ||||| || ||||| ||||||||||| ||||| | ||||| Sbjct 1458526 GGAATGCCCTCTTTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATC 1458575 >seq4393 Length=1805 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | |||||| ||||| ||||| |||||||| || || || | || ||| Sbjct 931 AGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCT 990 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| ||||| ||||| | | ||| ||||| ||||| || |||||||||||| Sbjct 991 TCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCC 1050 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| ||||| || | || ||| | || || ||||| || || || Sbjct 1051 TGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTT 1110 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| ||||| ||||| || ||||| Sbjct 1111 TTACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||||||| |||||||||||||| || || || | || || Sbjct 1386 AAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATC 1445 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||| ||||| ||||| | | ||| ||||| ||||| || || ||||| || Sbjct 1446 TTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTC 1505 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || |||||||| |||||||| | || || | ||| || ||||| ||||| || Sbjct 1506 TTGGATTTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGT 1565 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| || ||||| Sbjct 1566 TTTTCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| |||||||| || || || | || ||||| || || || ||| Sbjct 34 GTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCTTCGAGCTGCTTGCCA 93 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || ||||| ||||||||||||||||| || || || || Sbjct 94 GCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATCCTGGATTTTAGCCTTG 153 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || || || || |||| |||||||| ||||| ||||| ||| Sbjct 154 ACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGTTTTACCGGTAAGAGTT 213 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| || ||||| Sbjct 214 TTTACAAAAATTTGCAT 230 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||||| ||||| ||||| ||||| || ||||| || | || | || ||||| Sbjct 705 TACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCTTC 764 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| || ||||||||||| | | || ||||| ||||| || || ||||| ||||| Sbjct 765 GAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCCTG 824 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || |||||||| |||||||| | || || | || || || ||||| || || || Sbjct 825 GATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGTTTT 884 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||||||||| || ||||| Sbjct 885 GCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||| ||||| || | |||||||| || || ||||| Sbjct 1174 GTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCG 1233 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | ||||||||||||||||| || ||||||||||| ||||| || || || Sbjct 1234 GCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTG 1293 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||| | || || || ||||| || || || ||||| || || Sbjct 1294 ACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGTTTTGCCAGTGAGAGTC 1353 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1354 TTAACAAAGATCTGCAT 1370 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || || ||||||||||| || ||||| || | || | || ||||| Sbjct 250 ACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCG 309 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||||||||| | | || ||||| |||||||| |||||||| || ||| Sbjct 310 AGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTGTCTTGA 369 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || || ||||| | ||||| | || || ||||| || || || || Sbjct 370 ATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATTGTTTTG 429 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || || |||||||| Sbjct 430 CCAGTTAGAGTTTTAACGAAGATCTGCAT 458 >seq434 Length=1254451 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | ||| || ||||| |||||||| ||||| || || || | ||| ||||| Sbjct 843876 ACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTCG 843935 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||||||||| || | ||||| || ||||| || |||||||| || ||| Sbjct 843936 AGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGA 843995 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || || ||||| | |||||| || ||| ||||||| || || ||||| Sbjct 843996 ATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTCTTT 844055 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||| Sbjct 844056 CCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 >seq30 Length=3281913 Score = 116 bits (128), Expect = 9e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || ||||| || ||||| | || ||||| || ||||| || || |||| Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | ||| || || || |||||||| || || || ||||| ||||| || || || || | Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCT 593839 Query 104490 CTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 | | || || | ||| ||| ||||| | || ||||||||||| || || ||||| || Sbjct 593840 CAATTGTGTC-CGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACG 593898 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 593899 AAAATTTGCAT 593909 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| || || || || ||| |||| || | |||| ||||||| ||||| || | || Sbjct 991207 GATGGCATTGTCAATGAGAATTTAGTGGAAAGGTTCAGTCAAGAAGTACAAGTTACAGAG 991266 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | || || || || ||||| || || |||||||| || ||||||||||||||| | Sbjct 991267 GCTCGTTGCTTCTATGGTTTCCAAATTGCCATAGAAAACATCCATTCAGAGATGTAC--T 991324 Query 268997 CTATT 269001 ||||| Sbjct 991325 CTATT 991329 >seq363 Length=475187 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 |||||| | || | || || |||| | | ||| ||||| ||| ||||| || ||||| Sbjct 306297 TGGAATGCTGCAGAAATTCAGTTGGTTAAAGAAGGAAAAATTCATGGTTTCCTAAGAATG 306238 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGT 238712 |||||||||||||| || | |||||||| | ||| || |||| || || | || Sbjct 306237 TATTGGGCTAAAAAAATTTTAGAATGGACCAAATCACCGGAGGATGCCCTGAAGTACTCC 306178 Query 238713 ATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT-TG 238771 || ||||| || || |||||| | || || |||||| || ||||| || ||| || Sbjct 306177 ATCTATCTAAATGACAAATACAGCATGGATGGACGGGATCCCAATGGATATGTGGGTATG 306118 Query 238772 TA 238773 || Sbjct 306117 TA 306116 >seq353 Length=1135777 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||| |||||||||||||| || |||||||| | || || || || Sbjct 144436 AAGCACAAGATGAAGTGTGGATTCTTTCTGAATGTTGTAGTCAGACAAGGTCCTTCCATC 144495 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || ||||| ||||| || || | ||||| || ||||| || |||||| Sbjct 144496 CTCAAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCT 144547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151318073770060