Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq51 109 4e-19 >seq51 Length=2226466 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||||| ||| | || || || || | ||||||||| |||||||| || || || || Sbjct 309718 CATGTCCACGTATTTGGCGCCAAAGTATCGCCACTGGAAGCCGTACACGGGGCCAAGATC 309659 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 ||| || || ||| | ||||| | | |||| || || | ||| | |||||||| Sbjct 309658 TCCTTCCTCTCTGCCCGTGAAGCCGCAGATGTCCAGGAATTCCCGGGATGCGTTGGCGTC 309599 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 25952 |||||| || | || || |||| || ||||||| ||| || || ||||||| |||||| Sbjct 309598 CCAGATTTTAATACCTTTGGCGGACAGTTCTTTGGCGTTGGTCGAGCCTCTGATGAACCA 309539 Query 25953 CAGCAGCTCC 25962 | ||||||| Sbjct 309538 GAACAGCTCC 309529 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||||| |||| || || |||| | |||||| || || || || || |||| || Sbjct 126869 CATGTCCACATACTTGGCGCCAAAATGTCGCCACTGAAAGCCATATACAGGACCTAAATC 126810 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 ||| ||||| |||| | ||| || |||||||| | | ||||||||||| || Sbjct 126809 TCCTTCTTCTCTGTTAGTTAGGCCAAGATTGTCCAAAAATGCACGTGAACCATTGGCATC 126750 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 25952 ||| || || || || ||||| || | |||||||| ||||| || ||||| | ||||| Sbjct 126749 CCAAATGTTGACGCCTTTCTCTGATAACTCTTTGGCATTTGTTGAGCCTCTAATAAACCA 126690 Query 25953 CAGCAGCTCC 25962 ||||||||| Sbjct 126689 GAGCAGCTCC 126680 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 25497 GTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCG 25556 || |||| ||| || | | || || || |||| |||||||||||| ||||| ||| Sbjct 310121 GTGACGTGAGCTATGAGACAAGTCAGCAGGGAGTAAGAGGCGATGTTAAACGGTACGCCG 310062 Query 25557 AACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTA 25616 | ||||||| | || | |||||||| || |||||||||| ||| | || |||||| Sbjct 310061 AGGCCCATGT-CACCGGCTCTCTGGTACAGGTGACACGAGACCTCGCCACCGTCCACGTA 310003 Query 25617 AAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCA 25676 ||||| | | || ||| ||||| ||||| || ||| | || |||||||| Sbjct 310002 GAACTGGGCGAGCGAGTGGCAGGGAGGCAGAGCCATCAGGGGAATATCAACCGGGTTCCA 309943 Query 25677 GGCGCACACGATGATGCACCTGTCTTCTGGGTT-GTCC 25713 | || | ||| || | |||||| | ||||| |||| Sbjct 309942 CGAGCTGATGATTATTCTCCTGTCGTTGGGGTTCGTCC 309905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340115028149985