Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4393 116 3e-21 seq434 86.0 5e-12 >seq4393 Length=1805 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||| ||||||| || ||| | ||||| ||||||||||| || | Sbjct 495 CTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAA 554 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| |||||||||||||| || | || ||| ||||| |||||| ||| | | Sbjct 555 AATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTGGCCTTCACATT 614 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||||| || || ||| | ||| |||||||| || |||||||| || || Sbjct 615 TTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGAC 674 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 675 AAAGATCTGCAT 686 Score = 100 bits (110), Expect = 2e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| ||||| ||| ||||||||||| || || | || ||| ||| | || || |||| Sbjct 939 ATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTG-AAAGTGTACGCCCATCTTCGAGCT 997 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | ||||| || |||| |||||||||||||| || | || ||| || ||| ||||| Sbjct 998 GTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTT 1057 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTC--CGTCTCGACTGTTATGGTTTTACC 48699 | |||| | | | || || |||| | ||| | ||| || || || |||||||| Sbjct 1058 TAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGA--GTGATTGTTTTACC 1115 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| |||||||| ||||| Sbjct 1116 AGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || |||||||| ||| |||||||||||||||||| || | | | ||| |||| Sbjct 1159 AAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCT 1218 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| | |||| || | ||| ||||| || | || ||| || || Sbjct 1219 TCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCT 1278 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| ||||| | || ||||| | | ||| || | ||| |||||| Sbjct 1279 TGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGTT 1338 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| || ||||| |||||||| Sbjct 1339 TTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || |||||||| || |||||||||||||||||| || | || | || | || Sbjct 1615 AAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGTACGGCCATCT 1674 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || || |||| |||||||||||||| || | || ||| ||||| Sbjct 1675 TCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCTTCTTTGTCT 1734 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| ||||| | || ||||||| || ||| ||| | || || || Sbjct 1735 TGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTC 1794 Query 48695 TTACCGGTGAG 48705 || || ||||| Sbjct 1795 TTTCCAGTGAG 1805 >seq434 Length=1254451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGT 48572 ||| ||||||||||||||| ||| |||||||| ||||| || | || ||| || | | Sbjct 843872 TAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTG-AAAGTGTGCGACCAT 843930 Query 48573 CCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGT 48632 | || |||||||| || | |||| | || || || || || | || ||| |||| Sbjct 843931 CTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTGT 843990 Query 48633 CCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 | |||||| ||||| | || ||||||| || ||| ||| | || || | Sbjct 843991 CTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCG 844050 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || |||||||| || ||||| |||||||| Sbjct 844051 TCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421223245375445