Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq83 251 4e-62 >seq83 Length=1227863 Score = 251 bits (278), Expect = 4e-62 Identities = 450/650 (69%), Gaps = 23/650 (4%) Strand=Plus/Plus Query 3501 GATCCAACCCATTCGAATTAGTGGGCAAAGCtttttttATCAACAGAGGTGCTGTAAAAA 3560 ||||||| || || ||| | | || ||| | ||| ||||||| || || |||| Sbjct 591656 GATCCAATCCGTTTGAAACAATACGCGGGGCTATGTTTCAAAACAGAGCAGCGGTTAAAA 591715 Query 3561 TGGCAAACATTGATCATGCAACGAATTTCGTATTTACA---CGATTGAATGATGGATCAA 3617 |||| ||||| || | || ||||| | || ||| | | | ||| | | | Sbjct 591716 TGGCCAACATAGACAAAGCCTGTAATTTAATGTTCACAAACCCACTCAATCTTCAACCGG 591775 Query 3618 ATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGT 3677 | ||| || | || |||||||| || || ||||| || || || || || || ||| | | Sbjct 591776 ACGAACTGTTGTACTTTGCTGATGTTTGTGCTGGACCTGGAGGATTTAGCGAGTATGTTT 591835 Query 3678 TATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaa---aaaaTG 3734 |||||||||| || |||| |||||||| |||| | || ||| ||| |||||| Sbjct 591836 TATGGAGAAAAAAGTGGAGAGCCAAAGGTTTTGGTTTCACATTAA---AAAGTGAAAATG 591892 Query 3735 ATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTC 3794 |||| | || | ||| | | || ||||| || || ||||| ||||| Sbjct 591893 ATTTCAAGCTCCATGAATTCCAAGCAGGGCCTTGTGAAACGTTCCATCCGTACTATGG-- 591950 Query 3795 CGCTTAACGAT---GGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGA 3851 || || | ||| || || |||| | | ||||||| | || || | || | | Sbjct 591951 CG-TTGATGATACTGGCGATGTCTATCAGCCGAAAAATCAAATAGCCTTGAGAGATCTAA 592009 Query 3852 TTATG----AAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTC 3907 ||||| ||| | || ||| || || |||||||||||||||||||| || || || Sbjct 592010 TTATGTCGCAAACAAAC-GAACGA---GGAGTACATTTTATGATGGCTGATGGAGGATTT 592065 Query 3908 TCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAA 3967 || ||||| || ||||||||||| |||||||| || || || || ||||| | |||||| Sbjct 592066 TCAGTTGAAGGACAAGAAAATATACAAGAAATTTTGTCTAAGCAGCTGTATCTTTGTCAA 592125 Query 3968 TGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGAT 4027 ||||| ||||||||||||| || | | |||||| |||| ||| | |||| | |||||| Sbjct 592126 TGTTTGGTTGCATTGATGATTGTAAGGACTGGTGGACATTTTGTGACCAAAGTATTCGAT 592185 Query 4028 ATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATT 4087 | ||||| || ||||||||||| |||||||| | | ||| | | |||||| | || Sbjct 592186 TTGTTTACTCCATTTAGTGCTGGCTTAGTGTACATATTATATCGTTGTTTTAACCAAATC 592245 Query 4088 TGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 |||||||||||||| || | || |||| ||||| || ||||| || || Sbjct 592246 AGTATTTTCAAACCAAATACCTCCAGACCAGCCAACTCAGAAAGGTACTT 592295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276535247643835