Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1015 120 2e-22 seq131 111 8e-20 seq122 87.8 9e-13 seq26 84.2 1e-11 >seq1015 Length=13308 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 5923 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5864 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 5863 CAACTGAGCTAATGGGCC 5846 >seq131 Length=1915813 Score = 111 bits (122), Expect = 8e-20 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 612936 AAAAACAA--TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGC 612879 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 612878 TCTAACCAACTGAGCTAATGGGCC 612855 >seq122 Length=1596143 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| |||| | || |||||||||| || |||||||||||||||||| Sbjct 689910 AAAAAAAAAAAAAAATGGCTCCAGAGGGGATCGAACCCACGGCCTTCGCGTTATTAGCAC 689969 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||| |||||||| | |||| Sbjct 689970 GACGCTCTAACCAGCTGAGCTATGGAGCCG 689999 >seq26 Length=4002310 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| ||| | ||| || |||||||||| || |||||||||||||||||| Sbjct 3402336 AATAAAAAAAATAATGGCTCCA-GAGGGGATCGAACCCACGGCCTTCGCGTTATTAGCAC 3402278 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||| |||||||| | |||| Sbjct 3402277 GACGCTCTAACCAGCTGAGCTATGGAGCCG 3402248 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473847198820