Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq64 82.4 5e-11 >seq64 Length=1863977 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 71419 GTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTTG 71478 ||||| | ||| |||| ||||||||| |||||||||| ||| || | || || | Sbjct 1819055 GTCATGCGGGACGGAATGGCGTGGGGATTGATGATGATGTCCGGGGTGATACCCTCGCAG 1819114 Query 71479 TCGAAGGGCATGTCCTCCTGGGTCAGGACAGCT--CCGCATGTCCCCTTTTGCGCCGTGA 71536 ||| |||||||||||||| || | ||||| || || || |||||||| |||||| Sbjct 1819115 GTGAACGGCATGTCCTCCTG--TCGGTACAGCATGCCACAGGTGCCCTTTTGA-CCGTGA 1819171 Query 71537 AT-GACGCAAACTTGTCGCCCATCT 71560 |||||||||||||| || |||| Sbjct 1819172 CGCGACGCAAACTTGTCACCGATCT 1819196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338742319250280