Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4393 150 2e-31 seq434 120 3e-22 seq26 104 2e-17 seq350 91.5 1e-13 >seq4393 Length=1805 Score = 150 bits (166), Expect = 2e-31 Identities = 181/244 (74%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||| | ||||| ||||| || | || || |||||||| | Sbjct 1131 AAAAATTTGCATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAAT 1190 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || ||||||| | || || ||||| |||||| |||| || ||||| Sbjct 1191 GTTGTAGTCCG--ATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTC 1248 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| ||||||||||||||||| || | |||||| ||||||||| | | || Sbjct 1249 TGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTA 1308 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | || || || | ||||||||||| ||||| ||||| || |||||||||||| Sbjct 1309 TCAGAGGCCTCAACTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGC 1368 Query 95006 ATGC 95009 |||| Sbjct 1369 ATGC 1372 Score = 127 bits (140), Expect = 2e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| |||| |||||| ||||| || | ||||||||| || ||| |||||| | Sbjct 479 CAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGA 538 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || | || || || | ||||||||||| || |||||||||||||| | || Sbjct 539 GCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAA 598 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 |||| ||||| || | | || || | || || |||| ||||||||||||| Sbjct 599 TTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTC 658 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| ||||| || |||||||||||||||| Sbjct 659 CAGTGAGAGTCTTGACAAAGATCTGCATGC 688 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||||| ||||| || | || || ||||| || | |||||| ||| | Sbjct 4 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 63 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| || || |||| || | || ||| || ||||||||| Sbjct 64 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGA 123 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | ||||| ||||||||| | | ||||||| ||||| Sbjct 124 ATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACT 183 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || || ||||| || ||||||||||| ||||| || ||||||| Sbjct 184 TCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATGC 232 Score = 120 bits (132), Expect = 3e-22 Identities = 184/261 (70%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| || ||| |||||| |||| ||| || ||||||| | ||||| || || || Sbjct 198 TTTACCGGTAAGAGTTTTTACAAAAATTTGCATGCCTCCTCGAAGACGCAAAACTAAATG 257 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTT 94866 | ||| || || || || | ||| || || || || ||| || || || || Sbjct 258 GAGAGTTGACTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCGAGTTGCTT 317 Query 94867 TCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGC 94926 || |||| || || | ||||||||||||||| || ||||||||||| | |||||| || Sbjct 318 GCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTGTCTTGAATTTTAGC 377 Query 94927 CTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 ||||||| | | || || | | ||||| || | || || ||||| ||||| || Sbjct 378 CTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATTGTTTTGCCAGTTAG 437 Query 94987 AGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||||||||| Sbjct 438 AGTTTTAACGAAGATCTGCAT 458 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || || || |||| || || | ||||||||||||||| ||||| ||||| Sbjct 759 ATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTT 818 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||||| ||||| | | ||||||| | || || || | ||||| Sbjct 819 GTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGAT 878 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| |||||||||||||| |||||||| ||||| Sbjct 879 GGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 114 bits (126), Expect = 1e-20 Identities = 147/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||| || ||||| | |||||| || | | ||||| | ||| || |||||||| | Sbjct 946 GTAGACTCTTTTTGAATGTTATAGTC--TGAAAGTGTACGCCCATCTTCGAGCTGTTTAC 1003 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | || || || | |||||||| ||||| ||||||||||| || | |||||| || | Sbjct 1004 CAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTTAGCTT 1063 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| | | ||||| | | ||||| || | ||||| ||||| |||||||||| Sbjct 1064 TGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAG 1123 Query 94989 TTTTCACAAAGATCTGCATGC 95009 |||| ||||| || ||||||| Sbjct 1124 TTTTAACAAAAATTTGCATGC 1144 Score = 109 bits (120), Expect = 5e-19 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 |||||||| ||||| | ||||| || | | ||||| | ||| || |||||||| | Sbjct 1402 GTAGATTCTTTTTGAATATTATAGTC--TGAAAGTGTACGCCCATCTTCGAGCTGTTTAC 1459 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | || || || | |||||||||||||| ||||| |||||||| | |||||||| | Sbjct 1460 CAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTT 1519 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| | | ||||| | | ||||| || | ||| || |||||||| || || | Sbjct 1520 TGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGG 1579 Query 94989 TTTTCACAAAGATCTGCATGC 95009 |||| ||||| || ||||||| Sbjct 1580 TTTTAACAAAAATTTGCATGC 1600 Score = 105 bits (116), Expect = 6e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||| | ||||| ||||| || | ||||| |||||||| | Sbjct 1587 AAAAATTTGCATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAAT 1646 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| || || | ||| || ||||| || || | || || || | || Sbjct 1647 GTTGTAGTCGGACAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTG 1706 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 |||||||||||| |||||||||||||| | |||||| ||||||||| Sbjct 1707 CTGATCTGGAGGGATACCTTCTTTGTCTTGAATTTTAGCCTTGACG 1752 >seq434 Length=1254451 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||||| ||||| || | || || ||||| || | |||||| ||| | Sbjct 844086 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 844145 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| || || | || || || | ||||||||||||||| Sbjct 844146 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGG 844205 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| |||||||| | |||||||| ||||| | | ||||||| || || Sbjct 844206 ATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACC 844265 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || | ||||| || |||||||| || || || ||||||||||||||| || Sbjct 844266 TCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTTT 844316 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| | ||| || || || || | || || || ||||| | || || || | Sbjct 843858 CCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTC--TG 843915 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || ||| || ||||| || || |||| || | || ||| || ||||||| Sbjct 843916 AAAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAG 843975 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||||||||| | |||||| ||||||||| | | || || | || | Sbjct 843976 GGATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCA 844035 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | ||||| || |||||||| ||||| || |||||||||||||||| Sbjct 844036 CCTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATGC 844086 >seq26 Length=4002310 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | || |||| |||| || | |||||||||||| || | Sbjct 1458168 AAAAATTTGCATTCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAAT 1458227 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | ||| || ||||| |||||||| || | || || || | || Sbjct 1458228 GTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTG 1458287 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || ||||| ||||| ||||| || | ||||| || |||||| | | |||||| Sbjct 1458288 CTGGTCCGGAGGGATACCCTCTTTATCCTGGATTTTAGCTTTGACGTTCTCAATAGTGTC 1458347 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| || |||||||| | || || ||||| |||||||| Sbjct 1458348 GGATGCCTCGACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 >seq350 Length=778331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 ||||| | || |||||| | |||| | |||||| |||||||| || | ||||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 || || ||||| || || ||||| ||||||||||| | || || || ||||| || Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || |||| ||||| ||||| || || || ||||| || || Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 635068 ATCTGCAT 635061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260688180200