Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq224 87.8 4e-13 seq171 87.8 4e-13 seq41 87.8 4e-13 seq137 86.0 1e-12 seq8 86.0 1e-12 seq57 84.2 4e-12 seq699 82.4 2e-11 seq441 82.4 2e-11 seq152 82.4 2e-11 seq114 80.6 5e-11 seq111 80.6 5e-11 >seq224 Length=513413 Score = 87.8 bits (96), Expect = 4e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||||||||| ||||||| ||||||| || |||||||| | || | ||||| Sbjct 216024 ATAGTATATTACTCACCTAGGGAGAAAAAATAAAGAATGTCTCAGATCGCAGGCAATTGA 215965 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | ||||||||||||| ||| || || |||| ||||||||| || || || | || Sbjct 215964 CGCCCGAGGCGAAGCCGAGGGCGATAAGCATGCGATCTGAGGGATTCTTTGTTTCCTCCC 215905 Query 831 AAGGTGTGTATACTATTTTTC 851 || ||||||| ||||||| Sbjct 215904 GTGGGTTGTATACGATTTTTC 215884 >seq171 Length=939913 Score = 87.8 bits (96), Expect = 4e-13 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 710 TATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTG 769 ||||||||||||| |||| || | ||||||| || |||||||| || | ||||| Sbjct 162806 TATAGTATATTACTCACCTTGGAAGGAAAAATAAATAATGTCTCAGATTGCAGGCAATTG 162865 Query 770 TTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTT-TTTACTGG 828 | ||||||||||||||||| || || |||| ||||||||| || || ||| || Sbjct 162866 ACGCCCGAGGCGAAGCCAAGGGCGATAAGCATGCGATCTGAGGGATTCTTTGTTTTCT-C 162924 Query 829 CCAAGGTGTGTATACTATTTTT 850 || || ||||||| |||||| Sbjct 162925 CCGTGGGTTGTATACGATTTTT 162946 >seq41 Length=1584420 Score = 87.8 bits (96), Expect = 4e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 ||||||||||| || |||| | ||||||| || |||||||| |||| | ||||| Sbjct 183257 ATAGTATATTATTCACTTAGGGAGGAAAAATAAAGAATGTCTCAGATCACAGGCAATTGA 183198 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | |||| |||||||||| | ||| || |||| ||||||||| || || || | || Sbjct 183197 CGCCCGAAGCGAAGCCAAAGATGATAAGCATGCGATCTGAGGGATTCTTTGTTTCCTCCC 183138 Query 831 AAGGTGTGTATACTATTTTTC 851 || ||||||| ||||||| Sbjct 183137 GTGGGTTGTATACGATTTTTC 183117 >seq137 Length=756946 Score = 86.0 bits (94), Expect = 1e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||||||||| ||||||| || ||||||| || |||||||| | || | |||| Sbjct 125798 ATAGTATATTACTCACCTAGGAAAGAAAAATAAAGAATGTCTCAGATCGCAGGCAATTAA 125739 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | ||||||||||||| ||| | || |||| | ||||||| || || || | || Sbjct 125738 CGCCCGAGGCGAAGCCGAGGGCAATAAGCATGCGGTCTGAGGAATTCTTTGTTTCCTCCC 125679 Query 831 AAGGTGTGTATACTATTTTT 850 | || ||||||| |||||| Sbjct 125678 ATGGGTTGTATACGATTTTT 125659 >seq8 Length=2578679 Score = 86.0 bits (94), Expect = 1e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 707 AGTTATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAA 766 ||| |||||||||||| ||||||| | ||||||| || |||| ||| | || | || Sbjct 2035828 AGTAATAGTATATTACTCACCTAGGGAGGAAAAATAAAGAATGTCTTAGATCGCAAGCAA 2035887 Query 767 TTGTTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACT 826 ||| | |||||||||||| ||| || || |||| ||||||||| || || || | Sbjct 2035888 TTGACGCCCGAGGCGAAGCTGAGGGCGATAAGCATGCGATCTGAGGGATTCTTTGTTTCC 2035947 Query 827 GGCCAAGGTGTGTATACTATTTTTC 851 || || ||||||| ||||||| Sbjct 2035948 TCCCGTGGGTTGTATACGATTTTTC 2035972 >seq57 Length=1494204 Score = 84.2 bits (92), Expect = 4e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||||||||| ||||||| | ||||||| || |||| ||| || | ||||| Sbjct 1044598 ATAGTATATTACTCACCTAGGGAGGAAAAATAAAGAATGTCTAAGATTGCAGGCAATTGA 1044539 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | ||||||||||||| ||| || || |||| ||||||||| || || || | || Sbjct 1044538 CGCCCGAGGCGAAGCCGAGGGCGATAAGCATGCGATCTGAGGGATTCTTTGTTTCCTCCC 1044479 Query 831 AAGGTGTGTATACTATTTTTC 851 || ||||||| ||||||| Sbjct 1044478 GTGGGTTGTATACAATTTTTC 1044458 >seq699 Length=154218 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 710 TATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTG 769 ||||||||||||| ||||||| | ||||||| || |||||||| || ||||| Sbjct 98410 TATAGTATATTACGCACCTAGGGAGGGAAAATAAAGAATGTCTCAGATTGCAAAAAATTG 98351 Query 770 TTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGC 829 || |||||||||||||| | | || |||||||||||||| || || || || | Sbjct 98350 ATGCTCGAGGCGAAGCCAAAGGCAATAAGCATGTGATCTGAGGGATTCTTTGTTTCTTCC 98291 Query 830 CA-AGGTGTGTATACTATTTTT 850 || |||| |||| | |||||| Sbjct 98290 CATAGGT-TGTAAATGATTTTT 98270 >seq441 Length=323945 Score = 82.4 bits (90), Expect = 2e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||| ||||| ||||||| | ||||||| || |||||||| | || | ||||| Sbjct 229254 ATAGTACATTACTCACCTAGGGAGGAAAAATAAAGAATGTCTCAGATCGCAGGCAATTGA 229195 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | | ||||||||||| ||| || || |||| ||||||||| || || || | || Sbjct 229194 CGCCTGAGGCGAAGCCGAGGGCGATAAGCATGCGATCTGAGGGATTCTTTGTTTCCTCCC 229135 Query 831 AAGGTGTGTATACTATTTTT 850 || ||||||| |||||| Sbjct 229134 GTGGGTTGTATACGATTTTT 229115 >seq152 Length=887773 Score = 82.4 bits (90), Expect = 2e-11 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAG-TCTCAGAACACATGTA-ATT 768 |||||| ||||| |||||||| | ||| ||| || | ||| ||| |||| ||| ||| Sbjct 460625 ATAGTACATTACGTACCTAGGGAGGAAAAGTAAAGAATGATCT-AGATCACACGTATATT 460567 Query 769 GTTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGG 828 | ||||||||||||||||| || ||||| |||| ||||| || || || || | Sbjct 460566 GCCACCCGAGGCGAAGCCAAGGGTGGCAAACGTGTGTTCTGA-GCATTCTTTATTTCCTC 460508 Query 829 CCAAGGTGTGTATACTATTTTTC 851 || |||| |||||| ||||||| Sbjct 460507 CCGTGGTGCGTATACGATTTTTC 460485 >seq114 Length=1196943 Score = 80.6 bits (88), Expect = 5e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 705 ACAGTTATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGT 764 |||| ||||||||||||| ||||||| | ||||||| || |||||| | | || | Sbjct 1092706 ACAGGTATAGTATATTACTCACCTAGGGAGGAAAAATAAATAATGTCTCAAATCGCAGGC 1092647 Query 765 AATTGTTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTA 824 ||||| | |||||||||||| ||| || |||||||||||||| || | || Sbjct 1092646 AATTGACGCCCGAGGCGAAGCTGAGGGCAGTAAGCATGTGATCTGAGGGATTCTCTGTTT 1092587 Query 825 CTGGCCAAGGTGTGTATACTATTTTTC 851 || | || ||||||| ||||||| Sbjct 1092586 CTTATCGTGGGTTGTATACGATTTTTC 1092560 >seq111 Length=1246964 Score = 80.6 bits (88), Expect = 5e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||||||||| ||||||| | ||||||| || |||||||| || | ||||| Sbjct 1203982 ATAGTATATTACTCACCTAGGGAGGAAAAATAAAGAATGTCTCAGATTGCAGGCAATTGA 1204041 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGG 812 | ||||||||||||||||| | || |||| ||||||||| Sbjct 1204042 CGCCCGAGGCGAAGCCAAGGGCAATAAGCATGCGATCTGAGG 1204083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102617364396300