Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_006651.1 Length=19161 Score E Sequences producing significant alignments: (Bits) Value seq335 84.2 3e-12 seq13 84.2 3e-12 seq77 80.6 3e-11 >seq335 Length=527149 Score = 84.2 bits (92), Expect = 3e-12 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 7922 TTTCACTATTTCAATCAGTGAGTTTTCACTATTTTTTAGTAGTATACTTATAACTGTGAC 7981 ||||||||||| || ||||| | |||||||||| ||| |||||||||||||| | Sbjct 486842 TTTCACTATTTGAAATAGTGAATATTCACTATTTCAAAGTTGTATACTTATAACTTATTC 486783 Query 7982 AATGAGTGAATATGTACTGCAGATTAGTGAAAATCCACTATTTTATTTTTAGAGAG 8037 || ||||||||| ||| | | |||| || | |||||||| | ||||||||| Sbjct 486782 AAATAGTGAATATTCACTTTAAAATAGTAAATAATCACTATTTCAAATTTAGAGAG 486727 >seq13 Length=2642171 Score = 84.2 bits (92), Expect = 3e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 3439 AACAAACAATTAACTTGAATCAAAAATAGTATATTACACTACAAGGGCAGAAAGTTGAGA 3498 ||||||| ||| | || |||||||||||||| ||| ||||||||||||| ||||| Sbjct 2575199 AACAAACTTCTAAAATTAAAAAAAAATAGTATATTGCACAACAAGGGCAGAAAATTGAGC 2575258 Query 3499 TTCCTGCACTGCGCG--CCATGTGCCCGAGGCGAA 3531 ||||||||||||| | || |||| |||||||| Sbjct 2575259 TTCCTGCACTGCGAGATATATATGCCTGAGGCGAA 2575293 >seq77 Length=1086501 Score = 80.6 bits (88), Expect = 3e-11 Identities = 123/175 (70%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 3460 AAAAATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCATGT 3519 || ||||||||||||| ||||||| ||||| |||| || ||| |||| | | | Sbjct 158948 AACAATAGTATATTACGATACAAGGCCAGAAGGTTGGATTTTCTGGCGTGCGAGGCGAAT 158889 Query 3520 GCCCGAGGCGAAGCCGAGGGCAT----CATGGCACGCAGTTCAGGGCTCTCAAATTTCTG 3575 | || |||||||||||||| ||| | | ||||||| ||| ||| ||||| Sbjct 158888 GTCCAAGGCGAAGCCGAGGACATTGCGCCTTGCACGCA----AGGATATCCAACCTTCTG 158833 Query 3576 CCCATGTAGTGTATACTATTTTTCTTGCTATGCGGTCGAAAGTACGTTAAAAATT 3630 | ||| ||||||||||||||||| | | |||||||||||| || ||| Sbjct 158832 GGCGTGTGTCGTATACTATTTTTCTTGATCCTCCCCCGAAAGTACGTTCAATATT 158778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61192947183340