Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq224 87.8 1e-13 seq59 86.0 4e-13 seq137 84.2 2e-12 seq7 82.4 5e-12 seq91 80.6 2e-11 seq441 78.8 7e-11 seq41 78.8 7e-11 >seq224 Length=513413 Score = 87.8 bits (96), Expect = 1e-13 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 11024 GAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCA 11083 ||||||| ||||||| || || | || || || |||||||| | |||| || || Sbjct 215884 GAAAAATCGTATACAACCCACGGGAGGAAACAAAGAATCCCTCAGATCGCATGCTTATCG 215943 Query 11084 ACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGG 11143 ||||| |||| |||||| | |||| | || |||||||||| || |||||||| Sbjct 215944 CCCTCGGCTTCGCCTCGGGCGTCAATTGCCTGCGATCTGAGACATTCTTTATTTTTTCTC 216003 Query 11144 CCTAGGTATGTGATATACTATTT 11166 ||||||| || ||||||||||| Sbjct 216004 CCTAGGTGAGTAATATACTATTT 216026 Score = 82.4 bits (90), Expect = 5e-12 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 |||||||| | ||| ||| ||||||||||||| || | ||||| | ||||||||| Sbjct 216010 ACCTAGGGAGAAAAAATAAAGAATGTCTCAGATCGCAGGCAATTGACGCCCGAGGCGAAG 215951 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCG 6834 |||||| | | || |||| | ||||||| ||||| || | || | |||||| || Sbjct 215950 CCGAGGGCGATAAGCATGCGATCTGAGGGATTCTTTGTTTCCTCCCGTGGGTTGTATACG 215891 Query 6835 ATTTTTCTTC 6844 ||||||| || Sbjct 215890 ATTTTTCGTC 215881 >seq59 Length=1507822 Score = 86.0 bits (94), Expect = 4e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 11024 GAAAAATAGTATACACACCTTGGCCAGTAAA-AAGTAAACCCTCAGACCACATGTTTGTC 11082 ||||||| |||| || || || || ||| || || |||||||| | ||||||| || Sbjct 315187 GAAAAATCGTATGCAACCCACGGG-AGAAAACAAAGAATCCCTCAGATCGCATGTTTATC 315245 Query 11083 AACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTG 11142 ||||| ||||||||| | | |||| | || ||||| |||| || ||||||| | Sbjct 315246 GCCCTCGGCTTCACCTCCGGCGCCAATTGCCTGCGATCTAAGACATTCTTTATTTATCCT 315305 Query 11143 GCCTAGGTATGTGATATACTATTT 11166 ||||||| ||| ||||||||||| Sbjct 315306 CCCTAGGTTTGTAATATACTATTT 315329 >seq137 Length=756946 Score = 84.2 bits (92), Expect = 2e-12 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 ||||||| | ||| ||| ||||||||||||| || | |||| | ||||||||| Sbjct 125784 ACCTAGGAAAGAAAAATAAAGAATGTCTCAGATCGCAGGCAATTAACGCCCGAGGCGAAG 125725 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCG 6834 |||||| ||| || |||| ||||||||| ||||| || | ||| | |||||| || Sbjct 125724 CCGAGGGCAATAAGCATGCGGTCTGAGGAATTCTTTGTTTCCTCCCATGGGTTGTATACG 125665 Query 6835 ATTTTT 6840 |||||| Sbjct 125664 ATTTTT 125659 >seq7 Length=3069064 Score = 82.4 bits (90), Expect = 5e-12 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 11024 GAAAAATAGTATACACACCTTGGCCAGTAAA-AAGTAAACCCTCAGACCACATGTTTGTC 11082 ||||||| ||||||| || || || ||| || || |||||||||| |||| || || Sbjct 2185019 GAAAAATCGTATACAACCCACGGG-AGAAAACAAAGAATCCCTCAGACCGCATGCTTTTC 2185077 Query 11083 AACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTG 11142 |||| |||| | |||| | |||| | || |||||||||| || |||||||| | Sbjct 2185078 GCCCTCAGCTTCGCTTCGGGCGTCAATTGCCTGCGATCTGAGACATTCTTTATTTTTCCT 2185137 Query 11143 GCCTAGGTATGTGATATACTATTT 11166 ||||||| | ||||||||||| Sbjct 2185138 CCCTAGGTGAATAATATACTATTT 2185161 >seq91 Length=1210596 Score = 80.6 bits (88), Expect = 2e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 |||||||| ||| ||| |||| |||||||| || | ||||| ||||||||||| Sbjct 644391 ACCTAGGGAGGGAAAATAAAGAATGCCTCAGATCGCAGGAAATTGACGCCTGAGGCGAAG 644450 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCG 6834 |||||| | | |||| || | ||||||| ||||| || | | | | | |||||| || Sbjct 644451 CCGAGGGCTATAAACTTGCGATCTGAGGGATTCTTTGTTTCCGCCTATGGGTTGTATACG 644510 Query 6835 ATTTTTC 6841 ||||||| Sbjct 644511 ATTTTTC 644517 >seq441 Length=323945 Score = 78.8 bits (86), Expect = 7e-11 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 |||||||| ||| ||| ||||||||||||| || | ||||| ||||||||||| Sbjct 229240 ACCTAGGGAGGAAAAATAAAGAATGTCTCAGATCGCAGGCAATTGACGCCTGAGGCGAAG 229181 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTATGCG 6834 |||||| | | || |||| | ||||||| ||||| || | || | |||||| || Sbjct 229180 CCGAGGGCGATAAGCATGCGATCTGAGGGATTCTTTGTTTCCTCCCGTGGGTTGTATACG 229121 Query 6835 ATTTTT 6840 |||||| Sbjct 229120 ATTTTT 229115 >seq41 Length=1584420 Score = 78.8 bits (86), Expect = 7e-11 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 11024 GAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCA 11083 ||||||| ||||||| || || | || || || |||||||| | |||| || ||| Sbjct 183117 GAAAAATCGTATACAACCCACGGGAGGAAACAAAGAATCCCTCAGATCGCATGCTTATCA 183176 Query 11084 ACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGG 11143 | | | |||| | |||| | |||| | ||||||||||||| || |||||||| | Sbjct 183177 TCTTTGGCTTCGCTTCGGGCGTCAATTGCCTGTGATCTGAGACATTCTTTATTTTTCCTC 183236 Query 11144 CCTAGGTATGTGATATACTATTT 11166 |||| || | ||||||||||| Sbjct 183237 CCTAAGTGAATAATATACTATTT 183259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35677814377000