Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4393 120 3e-22 seq434 105 6e-18 seq26 104 2e-17 seq363 98.7 1e-15 >seq4393 Length=1805 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| ||| | ||||| | ||| | || | | Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | |||||| || ||| || |||||||| || ||||||||||| Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || | | |||| || || ||||| |||||||||| | | || ||| ||||||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCA--GACTATA 965 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||| ||||| ||||||| || || ||||| | || || Sbjct 964 ACATTCAAAAAGAGTCTACACTCCATCTTGTACTCCGACTTCGTGGTGG 916 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| |||| |||||| | || || | ||| | ||| | Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||| || |||||||| || || ||||| ||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACTATA 26946 || | | |||| || || ||||| |||||||||| | | || | ||| |||||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAG--ACTATA 1421 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||||||||||||||| ||||||| || || ||||| | || || Sbjct 1420 ATATTCAAAAAGAATCTACACTCCATCTTGTGCTTCGACTTCGTGGTGG 1372 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | ||||| ||| | ||||| | ||| | || | Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||| || |||||||| || || ||||| ||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | ||||| ||||||||||||| | | | ||||| ||| Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| ||||| | ||||| || | | ||| ||||||| Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGG 688 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | || || ||| | || ||| | ||| | || | Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| || || || |||||||| || ||||| || ||| Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 ||| |||| |||| | ||||| || |||||||||| | | || ||| |||||||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTC--CGACTATA 53 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| || || || || | ||| ||||| || | || ||||||| Sbjct 52 ACATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 4 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||||| ||| | || ||| | ||| | || | Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| || ||| ||||||||||| |||||||| ||||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | ||||| ||||||||||||| | | | ||||| ||| Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 279 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || ||| ||||| | || || | ||| ||||||| Sbjct 278 ATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGG 232 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 |||||||| |||||||| | || | ||| | ||| || || || | ||||| Sbjct 1802 ACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCCGATACAATTGAAAACGTCAAGGCT 1743 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 || ||| ||||||||||| || ||||| ||||| || | | |||| || ||||| Sbjct 1742 AAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCTGGCAAG 1683 Query 26913 CAACTCGAAGATGATAG-AAAC-GTCAGCGACTATAACATTCAAAAAGAATCTACTATCC 26970 || || ||||||| | | || ||| |||||| ||||||||||| || ||||| | | Sbjct 1682 CAGCTTGAAGATGGCCGTACACTGTC--CGACTACAACATTCAAAAGGAGTCTACCCTTC 1625 Query 26971 ATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || | || ||||||| Sbjct 1624 ATTTGGTCTTGCGTCTCCGAGGAGG 1600 >seq434 Length=1254451 Score = 105 bits (116), Expect = 6e-18 Identities = 173/245 (71%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 26753 TTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCAT 26812 |||| || |||||| |||| | ||||| || || | |||||||| |||||||| | Sbjct 844325 TTTTCAGGCAAACA---TGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTT 844269 Query 26813 CGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 26872 || | ||| | ||||| || || | |||||| ||| || |||||||| || Sbjct 844268 AGAGGTGGAAGCTTCTGACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGG 844209 Query 26873 GATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA- 26931 || ||||| ||||| ||| | | |||| || ||||| || |||||||||| | | Sbjct 844208 TATCCCTCCAGATCAGCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTAC 844149 Query 26932 AC-GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGA 26990 || ||| ||||||||||||||| || || || || | ||| ||||| || | || || Sbjct 844148 ACTGTC--CGACTATAACATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGA 844091 Query 26991 GGAGG 26995 ||||| Sbjct 844090 GGAGG 844086 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | |||||||| |||||||| | || | ||| | | Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| || ||| ||||||||||| || ||||| || ||| Sbjct 844024 GATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCAA 843965 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACTATA 26946 ||| |||| |||| | ||||| || |||||||||| | | | || | ||| |||| | Sbjct 843964 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCAG--ACTACA 843907 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||||||||| || || | ||| | || | ||||| |||| || Sbjct 843906 ATATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGG 843858 >seq26 Length=4002310 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| |||||||| ||||| ||| | || ||| | || | ||| | Sbjct 1458180 AATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTC 1458121 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||||||| | ||||| || || || || ||||| || || || || || Sbjct 1458120 AGATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCA 1458061 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTAT 26945 || | ||||| | | || |||||||||||||||| ||||| | |||| ||||| Sbjct 1458060 GCAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCA--GACTAC 1458003 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || || |||||||| || | ||||| || || | ||| | ||||| || Sbjct 1458002 AATATCCAGAAAGAATCCACACTACATCTTGTTCTTCGTCTTCGTGGAGGCAA 1457950 >seq363 Length=475187 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCAC 71731 || |||||||| | ||||||||||| | ||| | || || || |||||||| Sbjct 306312 ACTCATGATGATTTGTGGAATGCTGCAGAAATTCAGTTGGTTAAAGAAGGAAAAATTCAT 306253 Query 71732 GGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAG 71791 || | |||| | ||||| ||||| ||||| ||| | || ||||| || | || ||| | Sbjct 306252 GGTTTCCTAAGAATGTATTGGGCTAAAAAAATTTTAGAATGGACCAAATCACCGGAGGAT 306193 Query 71792 GCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAAC 71851 || || |||| || || |||||||| || | |||||| | || || || ||||| || Sbjct 306192 GCCCTGAAGTACTCCATCTATCTAAATGACAAATACAGCATGGATGGACGGGATCCCAAT 306133 Query 71852 GGTTATGTCGGT 71863 || ||||| ||| Sbjct 306132 GGATATGTGGGT 306121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478629821040400