Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4393 127 2e-24 seq434 111 1e-19 seq26 98.7 9e-16 seq350 96.9 3e-15 seq30 82.4 7e-11 >seq4393 Length=1805 Score = 127 bits (140), Expect = 2e-24 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| ||| | || || | |||||||||||| | Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | |||||| || ||| || |||||||| || ||||||||||| Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 ||| | |||||| || || || || ||||||||| | | | || ||| || |||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCA--GACTATA 965 Query 24169 ACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||| |||||| | ||| Sbjct 964 ACATTCAAAAAGAGTCTACACTCCAT 939 Score = 120 bits (132), Expect = 3e-22 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | || || ||| | |||||| | ||||||||||| Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || || || |||||||| || ||||| || ||| Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGCGATTATA 24168 || ||||||||| | |||||||| |||||||||| | | | || ||| ||| |||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTC--CGACTATA 53 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||| || || || || ||||||| || || Sbjct 52 ACATTCAGAAGGAGTCCACCCTTCATTTGGTCTT 19 Score = 120 bits (132), Expect = 3e-22 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| |||| |||||| | ||||| | |||||||| ||| Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| ||| || |||||||| || || ||||| ||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGT-CAGCGATTATA 24168 ||| | |||||| || || || || |||||||||| | | || | ||| | |||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAG--ACTATA 1421 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | |||||||||||||||||| | ||| | ||| Sbjct 1420 ATATTCAAAAAGAATCTACACTCCATCTTGTG 1389 Score = 114 bits (126), Expect = 1e-20 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||||| ||| | || ||| | |||||||||||| Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| || ||| |||||||||||||||||||| ||||| Sbjct 398 GATACGATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATCAG 339 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGATTATA 24168 || | |||||| | |||||||||||||||||| ||| | | ||| || || | Sbjct 338 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTC--GGACTACA 281 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||| ||||| || || | |||||||| || Sbjct 280 ACATTCAGAAAGAGTCAACTCTCCATTTAGTTTT 247 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | ||||| ||| | || || | ||||| |||||| Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| ||| || |||||||| || || ||||| ||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGATTATA 24168 || | |||||| | |||||||||||||||||| ||| | | ||| || || | Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTC--GGACTACA 737 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||| ||||| | ||| | || ||| | | ||||||| Sbjct 736 ACATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGG 688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 |||||||| |||| ||| | || || || || ||| || || || | ||||| Sbjct 1802 ACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCCGATACAATTGAAAACGTCAAGGCT 1743 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || ||| ||||||||||| || ||||| ||||| ||| | |||||| || |||||| Sbjct 1742 AAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGCGTTTGATTTTCGCTGGCAAG 1683 Query 24135 CAACTCGAAGATGACAGAA-AC-GTCAGCGATTATAACATTCAAAAAGAATCTACAATTC 24192 || || ||||||| | | | || ||| ||| || ||||||||||| || ||||| ||| Sbjct 1682 CAGCTTGAAGATGGCCGTACACTGTC--CGACTACAACATTCAAAAGGAGTCTACCCTTC 1625 Query 24193 ATTTAGTGTT 24202 |||| || || Sbjct 1624 ATTTGGTCTT 1615 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| | || || | ||||| |||||| Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| || ||| || |||||||| || ||||| |||||| Sbjct 1310 GATACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 1251 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| | ||| ||||| || ||||| | | | | || || ||| Sbjct 1250 CAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACTACAAC 1191 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| || || || ||||||| || || Sbjct 1190 ATTCAAAAGGAGTCCACCCTTCATTTGGTCTT 1159 >seq434 Length=1254451 Score = 111 bits (122), Expect = 1e-19 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | |||||||| |||| ||| | || || || || | Sbjct 844084 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGCTTCC 844025 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| || ||| ||||||||||| || ||||| || ||| Sbjct 844024 GATACAATTGAAAACGTCAAGGCTAAAATTCAAGACAAAGAAGGTATCCCTCCAGACCAA 843965 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 || ||||||||| | |||||||| ||||||||| | | | || ||| || || | Sbjct 843964 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGTCGCACACTTTCA--GACTACA 843907 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGAT 24228 | ||||||||||| || ||| |||||||||| ||| || | |||| || | || | || Sbjct 843906 ATATTCAAAAAGAGTCCACACTTCATTTAGTTTTACGACTTCGAGGTGGTCAATTCTAAT 843847 Query 24229 TC 24230 || Sbjct 843846 TC 843845 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 23975 TTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 |||| || |||||| |||| | ||||| || || | |||||||| |||| ||| | Sbjct 844325 TTTTCAGGCAAACA---TGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTT 844269 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 || || || || ||||| || || | |||||| ||| || |||||||| || Sbjct 844268 AGAGGTGGAAGCTTCTGACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGG 844209 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA- 24153 || ||||| ||||| || | |||||| || |||||||| |||||||||| | | | Sbjct 844208 TATCCCTCCAGATCAGCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTAC 844149 Query 24154 AC-GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||| ||| ||||||||||| || || || || ||||||| || || Sbjct 844148 ACTGTC--CGACTATAACATTCAGAAGGAGTCCACCCTTCATTTGGTCTT 844101 >seq26 Length=4002310 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| |||||||| ||||| ||| | |||||| | || ||||| || Sbjct 1458180 AATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTC 1458121 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||||||| | ||||| || || || || ||||| || || || || || Sbjct 1458120 AGATACCATCGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGACCA 1458061 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTAT 24167 ||| | || || | | || || ||||||||||||| |||| | |||| || || Sbjct 1458060 GCAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCA--GACTAC 1458003 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 || || || |||||||| ||| | ||| Sbjct 1458002 AATATCCAGAAAGAATCCACACTACAT 1457976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||||||| || | ||||| | || |||||||| Sbjct 1472365 ATGCAGATCTTCGTTAAAACTTTAACTGGCAAGACCATTACTTTAGAGGTCGAGGCATCT 1472306 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| |||||| |||||||||||||| || || || || Sbjct 1472305 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGCATCCCCCCAGACCAG 1472246 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | |||||||| | ||||| | || | | || || ||| Sbjct 1472245 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAAGACGGAAGGACACTTTCTGACTACAAC 1472186 Query 24171 ATTCAAAAAGAATCTACAATTCATTT 24196 ||||| || ||||| || |||| || Sbjct 1472185 ATTCAGAAGGAATCCACCCTTCACTT 1472160 >seq350 Length=778331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || |||||||| | || || ||| |||| ||| | || || ||||| Sbjct 635058 AAGATGCAGATTTTCGTAAAAACCCTCACGGGTAAAACGATCACCCTTGAGGTTGAGGCT 635117 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | |||||| ||||| |||||||||||||| || ||||| Sbjct 635118 TCTGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCCGAC 635177 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| |||| | || ||||| || ||||| |||| | | | | |||||| Sbjct 635178 CAGCAGAGGTTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTAC 635237 Query 24168 AACATTCAAAAAG--AATCT 24185 || || ||||||| ||||| Sbjct 635238 AATATCCAAAAAGGTAATCT 635257 >seq30 Length=3281913 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || ||| | || ||||| ||| Sbjct 593909 ATGCAAATTTTCGTGAAAACCCTGACGGGTAAGACTATCACCTTGGAGGTCGAAGCCTCG 593850 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || ||||| ||||| || ||||||||||| || || Sbjct 593849 GACACAATTGAGAACGTGAAGGCCAAGATACAGGACAAGGAGGGCATACCTCCGGACCAG 593790 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| || |||||| || |||||||||| | | | | ||| || ||| Sbjct 593789 CAAAGGTTGATTTTCGCCGGCAAACAGCTCGAAGATGGCCGCACTCTTTCCGACTACAAC 593730 Query 24171 ATTCAAAAAG 24180 || || |||| Sbjct 593729 ATCCAGAAAG 593720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429907469043975