Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4393 107 2e-18 seq434 96.9 3e-15 >seq4393 Length=1805 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || || ||||| |||||| | ||| ||| | Sbjct 230 ATGCAAATTTTTGTAAAAACTCTTACCGGTAAAACTATTACCTTAGAAGTCGAGGCTTCT 171 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || ||||| ||||||||||| | || || || Sbjct 170 GACACAATTGAAAACGTCAAGGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGACCAA 111 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| |||| |||| ||| ||||| || | ||||||| | || || |||| |||||| Sbjct 110 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTATAAC 51 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || ||||| || | ||| |||| ||| | | |||||||| Sbjct 50 ATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 4 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || || |||||||| || | ||| ||| || Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| |||||| || ||||| || |||| |||||| Sbjct 854 GACACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATCAG 795 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | |||| ||| ||||| ||| | ||||||| || || | || || ||| Sbjct 794 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACAAC 735 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||||||||| ||||| | || || | | |||||||| Sbjct 734 ATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGG 688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || || ||||| || || | ||| ||| || | Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| |||||| ||||||||||| |||| |||||| Sbjct 1082 GACACGATTGAGAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATCAG 1023 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| || || ||||| | ||||||| || | | || |||||| Sbjct 1022 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAC 963 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||||||||||||||| Sbjct 962 ATTCAAAAAGAGTCTAC 946 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || |||||||| ||||| | ||| || || Sbjct 1598 ATGCAAATTTTTGTTAAAACCCTAACAGGAAAAACAATTACGCTAGAAGTCGAAGCCTCA 1539 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| |||||| || ||||| || |||| |||||| Sbjct 1538 GACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 1479 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| || || ||||| | ||||||| || | | || ||||| Sbjct 1478 CAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATAAT 1419 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||| ||||| | ||| | ||| Sbjct 1418 ATTCAAAAAGAATCTACACTCCATCTTGTG 1389 >seq434 Length=1254451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| || |||||||| || ||||| ||||| || || ||| | || ||| | Sbjct 844316 AAACATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACGATCACCTTAGAGGTGGAAGC 844257 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||| ||| | | || ||| |||||| || ||||| || |||| || Sbjct 844256 TTCTGACACGATTGAAAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCTCCAGA 844197 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||||| | | |||| || ||||| || | ||||||| | || || |||| || Sbjct 844196 TCAGCAACGTTTGATTTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACACTGTCCGACTA 844137 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| || ||||| || | ||| |||| ||| | | |||||||| Sbjct 844136 TAACATTCAGAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGG 844086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425315773773400