Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq26 104 2e-17 seq4393 95.1 1e-14 seq434 84.2 2e-11 >seq26 Length=4002310 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || || || ||||| || ||||||||||| | Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | ||||| || || |||| | ||||| |||||| ||| Sbjct 1458241 AGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGG 1458300 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||| || || || ||| || || | | | ||||||| | ||| Sbjct 1458301 ATACCCTCTTTATCCTGGATTTTAGCT--TTGACGTTCTCAATAGTGTCGGATGCCTCGA 1458358 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || ||||| |||| || |||||||||||||||||| Sbjct 1458359 CCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1458408 >seq4393 Length=1805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| ||| || ||||||||||| || ||||| ||||||| | Sbjct 4 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 63 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || ||||| ||| |||| || || |||||||| ||| Sbjct 64 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGA 123 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || |||| ||| || | | | ||||| | ||| | Sbjct 124 ATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACT 183 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || ||||| ||||| || ||||| |||||||| ||||| Sbjct 184 TCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | | ||| | ||| || || ||||| ||||| ||||||||||| | | Sbjct 688 CCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGAC 747 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || | ||| ||||| ||| |||| | || || || || ||| Sbjct 748 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGG 807 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| || || | | | ||||| || ||| Sbjct 808 ATACCCTCTTTGTCCTGGATTTTTGCT--TTGACATTTTCAATTGTGTCAGAGGCCTCAA 865 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||||| || || || ||||| ||||| || ||||| Sbjct 866 CTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| ||| || |||||||||||||| ||||||||||| | Sbjct 1144 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTC--CG 1201 Query 16769 ATGGTTTTGG--CGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 || || | | |||| || | || || || ||| |||| | | |||||| || || Sbjct 1202 ATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAG 1261 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | || ||||| || ||||| ||| || | | | || || || ||| Sbjct 1262 GAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAA 1321 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||||| || || || || || ||||| |||||||| Sbjct 1322 CTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 >seq434 Length=1254451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| ||| || ||||||||||| || ||||| ||||||| | Sbjct 844086 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 844145 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || ||||| || |||| | || || || || ||| Sbjct 844146 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGG 844205 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| || || | | | ||||| | ||| Sbjct 844206 ATACCCTCTTTGTCTTGGATTTTTGCT--TTGACATTTTCAATCGTGTCAGAAGCTTCCA 844263 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | |||||| || ||||| || || || |||||||| |||||||| || Sbjct 844264 CCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 844315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405061117980550