Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq30 233 1e-56 seq887 131 1e-25 seq292 131 1e-25 seq683 123 2e-23 seq1121 113 3e-20 seq198 113 3e-20 seq4393 107 1e-18 seq26 104 2e-17 seq730 98.7 7e-16 seq434 93.3 3e-14 >seq30 Length=3281913 Score = 233 bits (258), Expect = 1e-56 Identities = 318/442 (72%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| | | ||||||| ||||| | || || || || || |||||||| |||||| Sbjct 1849467 ATGGGTAGCGTGAACGTTAATCGCAGCGTCAGCGATGCCTTTTATCGCTACAAGATGCCG 1849526 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| ||||| ||||| || || || || || || ||||| ||||| || |||||| Sbjct 1849527 CGCATCCAAGCCAAAGTCGAAGGCAAAGGCAATGGCATCAAAACTGTCATCGTGAACATG 1849586 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 || || || ||||| | | ||||| || ||||||||||| || | || || || Sbjct 1849587 GTCGAGGTAGCCAAGGCCATAAGTCGCCCGGCTACCTACCCGACCAAGTTCTTTGGCTGT 1849646 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 || || || ||||||||||||||||| || ||||||||||| ||||| ||||| Sbjct 1849647 GAGCTCGGTGCTCAGACGCAGTTTGACTTTAAGAACGAGCGCTTTATCGTCAACGGTAGC 1849706 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 || | | ||||||| ||||| | || |||||||| || ||||||| ||||| || Sbjct 1849707 CACGATGCGTCCAAGCTTCAGGATCTGCTCGACGGCTTCATCCGCAAGTACGTGCTCTGC 1849766 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCT 6521 | | | |||||||| || |||||||| ||| | || | |||| | ||||| || Sbjct 1849767 CCGAATTGCGATAATCCAGAGACCGATCTTTTGGTTAACGCGAAGAAAGGTACCATTTCG 1849826 Query 6522 CAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA--CACAAACTCAACA 6579 || ||||||||| || || | || ||| ||| || | || ||||| ||||| | Sbjct 1849827 CAATCCTGCAAAGCCTGTGGCCATCACGGCGTGCTTGA--GACCAACCACAAGCTCAATA 1849884 Query 6580 CCTTCATACTGAAGAATCCTCC 6601 ||| ||| ||||||||||| || Sbjct 1849885 CCTACATCCTGAAGAATCCGCC 1849906 >seq887 Length=28448 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10441 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 10500 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 10501 GGTCATATTTAGCCTTA 10517 >seq292 Length=446083 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106642 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 106583 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 106582 GGTCATATTTAGCCTTA 106566 >seq683 Length=188875 Score = 123 bits (136), Expect = 2e-23 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49514 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 49573 Query 20007 GGTAATATTTAGC 20019 ||| ||||||||| Sbjct 49574 GGTCATATTTAGC 49586 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 159541 CTCTCTCTTCAAAAGTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 159600 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 159601 GGTCATATTTAGCCTTA 159617 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| | |||||||| |||||||||| ||||||||||||||||| ||||||| Sbjct 100251 CTCTCTCTTCGAGGTTCTTTTTAACTTTCCCTTACGGTACTTGTTCGCTACTGGTCTCGT 100192 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||| ||||||| Sbjct 100191 GGTCATATTGAGCCTTA 100175 >seq1121 Length=25326 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 9912 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAC 9853 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||| |||| Sbjct 9852 GGCCGTATTTAGTCTTA 9836 >seq198 Length=593688 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 554885 CTCTCTTTTCAAAGTTCTTTTCAACTTTTTCTCACGGTACTTGTTCGCTATCGGTCTCGT 554826 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||| ||||||| Sbjct 554825 GGTCATATTCAGCCTTA 554809 >seq4393 Length=1805 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | |||||| || ||||| ||||| ||| || ||||| ||||| || ||| Sbjct 232 CCTCCTCGAAGACGCAAAACTAAATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGAC 291 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || |||| | || || | ||| || || ||||| || | ||||| ||||| | || Sbjct 292 AATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGT 351 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| |||||| ||| || || | | |||||| || ||| Sbjct 352 ATGCCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACT 411 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 412 TCTAGGGTTATTGTTTTGCCAGTTAGAGTTTTAACGAAGATCTGCAT 458 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | |||||| ||||||||||| ||| |||||| ||||| || || || ||| Sbjct 4 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 63 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || |||||||| || | || Sbjct 64 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGA 123 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| ||| ||||| ||| || || | | || || | || ||| Sbjct 124 ATTCCTTCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACT 183 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| |||||||||||||| || | ||||| || || || |||||| Sbjct 184 TCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATG 231 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | |||||| ||||||||||| ||| |||||||||||| ||||| || || Sbjct 1144 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAT 1203 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||||||||| || | | |||||||| | || Sbjct 1204 AGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGA 1263 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| || |||||| ||| || || | | ||||| |||||| Sbjct 1264 ATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACT 1323 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||| || ||||| || || | || || || || ||||||||| Sbjct 1324 TCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGATCTGCATG 1371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| ||||| |||||| ||||| || |||||||||| | ||| | || || | || Sbjct 483 ATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTG 542 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || || || || | || || ||||| | |||| ||||||||||| |||||| Sbjct 543 CTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT 602 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||||||||| | | ||||| | |||||| || | ||| || ||||| || || Sbjct 603 GGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGT 662 Query 38294 CAAGGTTTTCACGAATATCTGCATG 38318 | || || || || ||||||||| Sbjct 663 GAGAGTCTTGACAAAGATCTGCATG 687 >seq26 Length=4002310 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38112 AAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAAT 38171 || ||||| ||| ||||| ||||| ||||| ||||| | | | |||| ||||| Sbjct 1472160 AAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAAAGTGTCCTTCCGTCTTCTAAC 1472219 Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 || || || ||||| || || || || || || | ||||| |||||||||||| ||| Sbjct 1472220 TGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGAATC 1472279 Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 || ||| ||||||| | ||||| || || ||||| ||||| || || || Sbjct 1472280 TTGGCCTTGACATTCTCAATGGTATCAGATGCCTCGACCTCTAAAGTAATGGTCTTGCCA 1472339 Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| ||||| ||||||||| Sbjct 1472340 GTTAAAGTTTTAACGAAGATCTGCATG 1472366 >seq730 Length=86070 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||| | Sbjct 11265 CTCTCTTTTCATAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATTGGTCTTGT 11324 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| |||| Sbjct 11325 TGTCATATTTAGTCTTA 11341 >seq434 Length=1254451 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||| | || || || |||||||| ||| ||| |||||||||||||| || || Sbjct 843857 ACCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGA 843916 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | || || || ||||| || || |||||||| || | || Sbjct 843917 AAGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGG 843976 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||||||||| |||||| ||| || || | | ||||| | ||| || Sbjct 843977 GATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCAC 844036 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || || || || || | || || || || ||||||||| Sbjct 844037 CTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATG 844085 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| | |||||| ||||||||||| ||| |||||| ||||| || || || ||| Sbjct 844086 CCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGAC 844145 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || || || || | ||||| ||||| | ||| Sbjct 844146 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGG 844205 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| |||||| || ||||| | | || || | ||| || Sbjct 844206 ATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACC 844265 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| || || || || || || | ||| || || || |||||||||||| Sbjct 844266 TCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTTT 844316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334924972589795